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mmu_circExoc7_291
Basic information of circular RNA
PanCircBase ID:
mmu_circExoc7_291
mm39_Chr. Position ID:
chr11|116195402|116195874|-
Gene name:
Exoc7
Transcript:
ENSMUST00000021147.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
4,3
Exon/intron offsets:
0,287
Genomic length:
472
Exon/intron sizes in nt:
1,06,185
Flanking exon/introns:
chr11:116192152-116195402|chr11:116195874-116197213
Splice length:
291
Other database IDs:
CIRCpedia: MMU_CIRCpedia_213986, circAtlas: mmu-Exoc7_0016
CIRCpedia: HSA_CIRCpedia_22446
Human Ortholog IDs:
Mature spliced Sequence:
GTGTCCATCCTGTCGTCCTTTGAGAGCCGACTCATGAAGCTGGAGAACTCTATCATCCCTGTGCACAAGCAGACAGAGAACCTACAGAGGCTGCAGGAGAACGTGGAGAAGACGTTATCCTGCCTGGACCACGTTATCAGCTACTACCACGTAGCCAGCGACACGGAGAAGATCATCCGAGAGGGCCCCACAGGTAGGCTGGAAGAGTACCTGGGAAGTATGGCCAAAATCCAGAAGGCTGTGGAGTATTTTCAGGACAATAGCCCAGACAGCCCAGAACTCAACAAAGTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGCCAAAATCCAGAAGGCT
59.89
TGCTTGTGCACAGGGATGAT
59.96
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGCCAAAATCCAGAAGGCTG
59.47
TGCTTGTGCACAGGGATGAT
59.96
141
PCR template sequence:
AGGTAGGCTGGAAGAGTACCTGGGAAGTATGGCCAAAATCCAGAAGGCTGTGGAGTATTTTCAGGACAATAGCCCAGACAGCCCAGAACTCAACAAAGTGGTGTCCATCCTGTCGTCCTTTGAGAGCCGACTCATGAAGCTGGAGAACTCTATCATCCCTGTGCACAAGCAGACAGAGAACCTACAGAGGCTGCAGGAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-207(2)
siRNAs for circular RNA silencing
Junction sequence
ACTCAACAAAGTGGTGTCCATCCTGT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCEXOC7_291_ORF_1
1.2741
0.584579114
0.969660756
549
ORF sequence:
ATGAAGCTGGAGAACTCTATCATCCCTGTGCACAAGCAGACAGAGAACCTACAGAGGCTGCAGGAGAACGTGGAGAAGACGTTATCCTGCCTGGACCACGTTATCAGCTACTACCACGTAGCCAGCGACACGGAGAAGATCATCCGAGAGGGCCCCACAGGTAGGCTGGAAGAGTACCTGGGAAGTATGGCCAAAATCCAGAAGGCTGTGGAGTATTTTCAGGACAATAGCCCAGACAGCCCAGAACTCAACAAAGTGGTGTCCATCCTGTCGTCCTTTGAGAGCCGACTCATGAAGCTGGAGAACTCTATCATCCCTGTGCACAAGCAGACAGAGAACCTACAGAGGCTGCAGGAGAACGTGGAGAAGACGTTATCCTGCCTGGACCACGTTATCAGCTACTACCACGTAGCCAGCGACACGGAGAAGATCATCCGAGAGGGCCCCACAGGTAGGCTGGAAGAGTACCTGGGAAGTATGGCCAAAATCCAGAAGGCTGTGGAGTATTTTCAGGACAATAGCCCAGACAGCCCAGAACTCAACAAAGTG
Peptide sequence:
MKLENSIIPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQKAVEYFQDNSPDSPELNKVVSILSSFESRLMKLENSIIPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQKAVEYFQDNSPDSPELNKV
IRESfinder result
IRESfinder score
0.487638819
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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