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mmu_circElapor1_2506
Basic information of circular RNA
PanCircBase ID:
mmu_circElapor1_2506
mm39_Chr. Position ID:
chr3|108367000|108389794|-
Gene name:
Elapor1
Transcript:
ENSMUST00000106625.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
18
Exon/intron indexes:
21,20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4
Exon/intron offsets:
0,1254,1511,3205,3785,4570,5921,8068,9843,10217,11663,12284,13038,15276,21291,21579,22097,22646
Genomic length:
22794
Exon/intron sizes in nt:
1,66,17,91,27,10,29,71,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr3:108365784-108367000|chr3:108389794-108396145
Splice length:
2506
Other database IDs:
circAtlas: mmu-5330417C22Rik_0005
circAtlas: hsa-KIAA1324_0005, CIRCpedia: HSA_CIRCpedia_170371
Human Ortholog IDs:
Mature spliced Sequence:
GTCCAAGTGGGTTCCCCGGGGAGACTACATCGCCTCCAACACAGATGAATGCACCGCCACACTGATGTATGCCGTCAACCTAAAGCAGTCTGGCACCGTTAACTTTGAGTACTACTACCCGGACTCCAGCATCATCTTTGAATTTTTTGTCCAGAATGACCAGTGCCAGCCCAGTGCTGATGACTCCAGGTGGATGAAGACTACGGAGAAAGGATGGGAATTCCACAGTGTTGAGCTAAATAGAGGCAATAACGTCCTCTATTGGAGAACCACAGCTTTCTCGGTGTGGTCCAAAGTGTCCAAGCCCGTGCTTGTTAGAAACATCGCCATAACAGGGGTGGCTTACACCTCCGAGTGTTTCCCCTGCAAGCCTGGCACATACGCTGCCAAGCAGGGCTCCCCTTTCTGCAAGCTTTGTCCAGCCAACTACTACTCAAACAAAGGAGAAACGTCCTGCCATCCGTGTGATGCTGACAAATACTCAGAAAAAGGATCTTCCACCTGCAAAGTGCGCCCAGCCTGCACAGACAAGGACTATTTCTACACCCACACAGCCTGTGATGCTCAGGGAGAGACACAGCTCATGTACAAATGGGCCATACCAAAAATCTGCGGTGAGGACCTGGAGGGGGCGGTGAAGCTGCCCGCCTCTGGTGTGAAGACCCGCTGCCCACCCTGTAACCCGGGCTTCTTCAAAACCGACAACAGCACCTGTGAACCTTGCCCATACGGCTCGTACTCCAACGGCTCGGATTGTACCCACTGCCCAGCAGGAACTGAGCCTGCCGTGGGATTTGAGTACAAATGGTGGAACACACTGCCCTCCAACATGGAAACTACGGTTCTCAGTGGGATCAACTTTGAATACAAGGGCCTGACAGGCTGGGAGGTGGCTGGTGACCACATTTATACAGCTGTTGGTGCCTCAGACAACGACTTCATGATTCTCACTCTGGTTGTACCAGGATTTAGACCTCCACAGTCAGTGGTGGCAGACACAGAGAACAAAGAGGTGGCCAGGATCACATTTGTCTTCGAGACCATCTGCTCTGTGAACTGTGAGCTCTACTTCATGGTGGGCATGAATTCCAGGACCAATACTCCTGTGGAGACGTGGAAGGGCACCAAAGGCAAGCAGTCCTATACCTACACCATCGAAGAGAATGCTACTGTGAGCTTCACATGGGCCTTCCAGAGGACCACCCTTCATGAAACAGGCAGGAAGTATACTAATGATGTCGCCAAGATCTACTCAATCAATGTCACCAACGTCATGGGGGGCGTGGCCTCCTACTGCCGTCCCTGTGCCCTAGAAGCCTCTGATTTGGGCTCCTCCTGCACCTCTTGTCCTGCTGGCCATTACATCAACCGGGATTCTGGGACCTGCCACCTCTGTCCCTCTAACACCATCCTGAAAGCTCACCAGCCTTACGGTGCACAGGCCTGTGTGCCCTGTGGTCCAGGGACCAAGAATAACAAGATCCACTCTCTCTGCTACAACGACTGCACCTTCTCCCGAAACACCCCCAGCAGGATTTTCAACTACAACTTCTCAGCTCTGGCAGGCACCGTCTCTCTGGCAGGGGTGCCGAGCTTCACCTCGAAGGGGCTGAAGTATTTTCATCATTTCACCCTGAGTCTCTGTGGAAACCAGGGGAAAAAAATGGCTGTGTGCACAGACAATGTCACTGACCTCCGGATCCCTGATGGTGAGGCCGGCTTCTCTAAGTCCGTCACAGCCTATGTCTGCCAGGTTGTCATCATCCCCTCTGAGGTGATGGGCTACAAGGCCGGGGTGTCCTCACAGCCCGTCAGCCTTGCTGACCGACTTGTTGGAGTGTCAACAGACATGACCTTGGAAGGAATCGTCTCCCCAGTTGAACTTTTTCACCCAGAGACCTCGGGAATTCCGGACATAGTCTTCTTTTTTAGATCCAATGATGTGACCCAGTCCTGCAGTTCTGGAAGATCAACCACCATCCGCCTCAGATGCAATCCAATGAAAGCTGCTCCTGGCACCCTGCGGCTACCCAGCATGTGCTCTGATGGGACCTGTGATGGCTGTAACTTCCACTTCCTGTGGGAGAGTGTGGCCGCTTGTCCACTCTGCTCGGCCTCTGACTACCACACTTTTGTCAGCAGCTGTGTGGCTGGGATCCAGAAGACTACTTACATGTGGCGAGAACCAAAGCTGTGCTCTGGGGGCATTTCCCTGCCTGAGCAGAGAGTTACCATCTGCAAAACGATCGATTTCTGGTTAAAAGTGGGCATCTCGGCTGGCACCTGCACTGCCATCCTGCTTACTGTCCTGACCTGCTACTTTTGGAAGAAGAATCAAAAATTAGAATACAAATACTCCAAGTTGGTAATGAACGCTACTCTTAAAGACTGCGACCTGCCGGCAGCAGACAGCTGTGCCATCATGGAAGGAGAGGACGTGGAGGATGACTTCATCTTTACCAGCAAGAAGTCCCTCTTTGGGAAGATCAAATCCTTTACCTCCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATGGAAGGAGAGGACGTGGA
59.96
ACTGCTTTAGGTTGACGGCA
59.89
173
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CATGGAAGGAGAGGACGTGG
59.82
ACTGCTTTAGGTTGACGGCA
59.89
174
PCR template sequence:
AGACAGCTGTGCCATCATGGAAGGAGAGGACGTGGAGGATGACTTCATCTTTACCAGCAAGAAGTCCCTCTTTGGGAAGATCAAATCCTTTACCTCCAAGGTCCAAGTGGGTTCCCCGGGGAGACTACATCGCCTCCAACACAGATGAATGCACCGCCACACTGATGTATGCCGTCAACCTAAAGCAGTCTGGCACCGTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
29
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-200a-3p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-205-5p(1), mmu-miR-146a-5p(1), mmu-miR-18a-5p(1), mmu-miR-203-3p(1), mmu-miR-320-3p(1), mmu-miR-125b-5p(1), mmu-miR-214-3p(1), mmu-miR-24-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-127-5p(1), mmu-miR-382-5p(1), mmu-miR-370-3p(1), mmu-miR-541-5p(1), mmu-miR-34b-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-673-5p(1), mmu-miR-335-3p(1), mmu-miR-484(1), mmu-miR-188-3p(1), mmu-miR-540-3p(1), mmu-miR-670-5p(1), mmu-miR-490-3p(1), mmu-miR-7a-2-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTTTACCTCCAAGGTCCAAGTGGGTT
siRNA sets
AACCCACTTGGACCTTGGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCELAPOR1_2506_ORF_1
0.9121
0.26885618
0.999999884
2568
ORF sequence:
ATGACTTCATCTTTACCAGCAAGAAGTCCCTCTTTGGGAAGATCAAATCCTTTACCTCCAAGGTCCAAGTGGGTTCCCCGGGGAGACTACATCGCCTCCAACACAGATGAATGCACCGCCACACTGATGTATGCCGTCAACCTAAAGCAGTCTGGCACCGTTAACTTTGAGTACTACTACCCGGACTCCAGCATCATCTTTGAATTTTTTGTCCAGAATGACCAGTGCCAGCCCAGTGCTGATGACTCCAGGTGGATGAAGACTACGGAGAAAGGATGGGAATTCCACAGTGTTGAGCTAAATAGAGGCAATAACGTCCTCTATTGGAGAACCACAGCTTTCTCGGTGTGGTCCAAAGTGTCCAAGCCCGTGCTTGTTAGAAACATCGCCATAACAGGGGTGGCTTACACCTCCGAGTGTTTCCCCTGCAAGCCTGGCACATACGCTGCCAAGCAGGGCTCCCCTTTCTGCAAGCTTTGTCCAGCCAACTACTACTCAAACAAAGGAGAAACGTCCTGCCATCCGTGTGATGCTGACAAATACTCAGAAAAAGGATCTTCCACCTGCAAAGTGCGCCCAGCCTGCACAGACAAGGACTATTTCTACACCCACACAGCCTGTGATGCTCAGGGAGAGACACAGCTCATGTACAAATGGGCCATACCAAAAATCTGCGGTGAGGACCTGGAGGGGGCGGTGAAGCTGCCCGCCTCTGGTGTGAAGACCCGCTGCCCACCCTGTAACCCGGGCTTCTTCAAAACCGACAACAGCACCTGTGAACCTTGCCCATACGGCTCGTACTCCAACGGCTCGGATTGTACCCACTGCCCAGCAGGAACTGAGCCTGCCGTGGGATTTGAGTACAAATGGTGGAACACACTGCCCTCCAACATGGAAACTACGGTTCTCAGTGGGATCAACTTTGAATACAAGGGCCTGACAGGCTGGGAGGTGGCTGGTGACCACATTTATACAGCTGTTGGTGCCTCAGACAACGACTTCATGATTCTCACTCTGGTTGTACCAGGATTTAGACCTCCACAGTCAGTGGTGGCAGACACAGAGAACAAAGAGGTGGCCAGGATCACATTTGTCTTCGAGACCATCTGCTCTGTGAACTGTGAGCTCTACTTCATGGTGGGCATGAATTCCAGGACCAATACTCCTGTGGAGACGTGGAAGGGCACCAAAGGCAAGCAGTCCTATACCTACACCATCGAAGAGAATGCTACTGTGAGCTTCACATGGGCCTTCCAGAGGACCACCCTTCATGAAACAGGCAGGAAGTATACTAATGATGTCGCCAAGATCTACTCAATCAATGTCACCAACGTCATGGGGGGCGTGGCCTCCTACTGCCGTCCCTGTGCCCTAGAAGCCTCTGATTTGGGCTCCTCCTGCACCTCTTGTCCTGCTGGCCATTACATCAACCGGGATTCTGGGACCTGCCACCTCTGTCCCTCTAACACCATCCTGAAAGCTCACCAGCCTTACGGTGCACAGGCCTGTGTGCCCTGTGGTCCAGGGACCAAGAATAACAAGATCCACTCTCTCTGCTACAACGACTGCACCTTCTCCCGAAACACCCCCAGCAGGATTTTCAACTACAACTTCTCAGCTCTGGCAGGCACCGTCTCTCTGGCAGGGGTGCCGAGCTTCACCTCGAAGGGGCTGAAGTATTTTCATCATTTCACCCTGAGTCTCTGTGGAAACCAGGGGAAAAAAATGGCTGTGTGCACAGACAATGTCACTGACCTCCGGATCCCTGATGGTGAGGCCGGCTTCTCTAAGTCCGTCACAGCCTATGTCTGCCAGGTTGTCATCATCCCCTCTGAGGTGATGGGCTACAAGGCCGGGGTGTCCTCACAGCCCGTCAGCCTTGCTGACCGACTTGTTGGAGTGTCAACAGACATGACCTTGGAAGGAATCGTCTCCCCAGTTGAACTTTTTCACCCAGAGACCTCGGGAATTCCGGACATAGTCTTCTTTTTTAGATCCAATGATGTGACCCAGTCCTGCAGTTCTGGAAGATCAACCACCATCCGCCTCAGATGCAATCCAATGAAAGCTGCTCCTGGCACCCTGCGGCTACCCAGCATGTGCTCTGATGGGACCTGTGATGGCTGTAACTTCCACTTCCTGTGGGAGAGTGTGGCCGCTTGTCCACTCTGCTCGGCCTCTGACTACCACACTTTTGTCAGCAGCTGTGTGGCTGGGATCCAGAAGACTACTTACATGTGGCGAGAACCAAAGCTGTGCTCTGGGGGCATTTCCCTGCCTGAGCAGAGAGTTACCATCTGCAAAACGATCGATTTCTGGTTAAAAGTGGGCATCTCGGCTGGCACCTGCACTGCCATCCTGCTTACTGTCCTGACCTGCTACTTTTGGAAGAAGAATCAAAAATTAGAATACAAATACTCCAAGTTGGTAATGAACGCTACTCTTAAAGACTGCGACCTGCCGGCAGCAGACAGCTGTGCCATCATGGAAGGAGAGGACGTGGAGGATGACTTCATCTTTACCAGCAAGAAGTCCCTCTTTGGGAAGATCAAATCCTTTACCTCCAAG
Peptide sequence:
MTSSLPARSPSLGRSNPLPPRSKWVPRGDYIASNTDECTATLMYAVNLKQSGTVNFEYYYPDSSIIFEFFVQNDQCQPSADDSRWMKTTEKGWEFHSVELNRGNNVLYWRTTAFSVWSKVSKPVLVRNIAITGVAYTSECFPCKPGTYAAKQGSPFCKLCPANYYSNKGETSCHPCDADKYSEKGSSTCKVRPACTDKDYFYTHTACDAQGETQLMYKWAIPKICGEDLEGAVKLPASGVKTRCPPCNPGFFKTDNSTCEPCPYGSYSNGSDCTHCPAGTEPAVGFEYKWWNTLPSNMETTVLSGINFEYKGLTGWEVAGDHIYTAVGASDNDFMILTLVVPGFRPPQSVVADTENKEVARITFVFETICSVNCELYFMVGMNSRTNTPVETWKGTKGKQSYTYTIEENATVSFTWAFQRTTLHETGRKYTNDVAKIYSINVTNVMGGVASYCRPCALEASDLGSSCTSCPAGHYINRDSGTCHLCPSNTILKAHQPYGAQACVPCGPGTKNNKIHSLCYNDCTFSRNTPSRIFNYNFSALAGTVSLAGVPSFTSKGLKYFHHFTLSLCGNQGKKMAVCTDNVTDLRIPDGEAGFSKSVTAYVCQVVIIPSEVMGYKAGVSSQPVSLADRLVGVSTDMTLEGIVSPVELFHPETSGIPDIVFFFRSNDVTQSCSSGRSTTIRLRCNPMKAAPGTLRLPSMCSDGTCDGCNFHFLWESVAACPLCSASDYHTFVSSCVAGIQKTTYMWREPKLCSGGISLPEQRVTICKTIDFWLKVGISAGTCTAILLTVLTCYFWKKNQKLEYKYSKLVMNATLKDCDLPAADSCAIMEGEDVEDDFIFTSKKSLFGKIKSFTSK
IRESfinder result
IRESfinder score
0.515591092
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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