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mmu_circDpp10_920
Basic information of circular RNA
PanCircBase ID:
mmu_circDpp10_920
mm39_Chr. Position ID:
chr1|123312013|123413854|-
Gene name:
Dpp10
Transcript:
ENSMUST00000112606.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
10
Exon/intron indexes:
15,14,13,12,11,10,9,8,7,6
Exon/intron offsets:
0,637,14236,18548,27426,39328,48646,60916,101609,101788
Genomic length:
101841
Exon/intron sizes in nt:
48,92,108,39,124,98,155,121,82,53
Flanking exon/introns:
chr1:123305977-123312013|chr1:123413854-123578016
Splice length:
920
Other database IDs:
circAtlas: mmu-Dpp10_0024
circAtlas: hsa-DPP10_0027
Human Ortholog IDs:
Mature spliced Sequence:
ATTTTTCATTACTCATTTACCGCTTCATATTTGATTTACAACATACACACTGGGGAAGTGTGGGAGTTGAATCCCCCAGAAGTTGAGGACTCAGTGTTGCAGTATGCGGCCTGGGGTGTGCAAGGACAGCAGCTGATTTATATTTTTGAAAACAATATCTACTATCAACCTGATATCAAGAGCAGTTCTTTACGACTAACATCTTCAGGAAAGGAAGGCATTATTTTTAATGGGATTGCTGACTGGTTATATGAAGAAGAACTTCTGCATTCTCATATCGCCCACTGGTGGTCCCCCGATGGAGAGAGACTTGCCTTCCTGATGATAAATGACTCGTTGGTGCCTAACATGATCATACCTCGGTTTACTGGAGCACTGTACCCCAAAGCAAAGCAGTACCCATACCCCAAGGCAGGTCAAGCGAACCCATCAGTGAAGTTATATGTTGTAAACCTGTATGGACCAACTCATACTTTGGAGCTGATGCCACCCGACATTTTTAAATCAAGAGAATATTACATCACCATGGTTAAATGGGTGAGCAACACGAGGACAGTGGTCAGGTGGTTGAATCGGCCTCAGAACATCTCCATCCTCACACTCTGTGAATCTACCACCGGGGCATGCAGCAGGAAATATGAGATGACGTCCGACACCTGGCTCTCTAAACAGAACGAGGAGCCAGTGTTTTCCAGAGATGGAAGCAAGTTCTTCATGACTGTTCCTGTTAAACAAGGTGGAAGAGGAGAATTCCACCACATAGCTATGTTCCTGGTCCAGAGTAAAAGCGAGCAAATTACGGTGCGGCATCTGACATCAGGAAACTGGGAAGTGATAAGGATCTTGGCCTATGATGAAACAACTCAAAAAATTTACTTTCTGAGCACAGAATCTTCTCCCCAAGGGAGGCAACTATACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGGAAGTGATAAGGATCTTGGC
60.12
CAACTCCCACACTTCCCCAG
60.25
164
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGAAGTGATAAGGATCTTGGCCT
59.86
CAACTCCCACACTTCCCCAG
60.25
162
PCR template sequence:
GAAACTGGGAAGTGATAAGGATCTTGGCCTATGATGAAACAACTCAAAAAATTTACTTTCTGAGCACAGAATCTTCTCCCCAAGGGAGGCAACTATACAGATTTTTCATTACTCATTTACCGCTTCATATTTGATTTACAACATACACACTGGGGAAGTGTGGGAGTTGAATCCCCCAGAAGTTGAGGACTCAGTGTTGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-410-3p(2), mmu-miR-344d-3p(2), mmu-miR-574-5p(2), mmu-miR-122-5p(1), mmu-miR-149-5p(1), mmu-miR-3061-5p(1), mmu-miR-202-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GGCAACTATACAGATTTTTCATTACT
siRNA sets
AATGAAAAATCTGTATAGT,TAATGAAAAATCTGTATAG,AAAAATCTGTATAGTTGCC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCDPP10_920_ORF_1
0.78
0.07147667
0.735860784
633
ORF sequence:
ATGATAAATGACTCGTTGGTGCCTAACATGATCATACCTCGGTTTACTGGAGCACTGTACCCCAAAGCAAAGCAGTACCCATACCCCAAGGCAGGTCAAGCGAACCCATCAGTGAAGTTATATGTTGTAAACCTGTATGGACCAACTCATACTTTGGAGCTGATGCCACCCGACATTTTTAAATCAAGAGAATATTACATCACCATGGTTAAATGGGTGAGCAACACGAGGACAGTGGTCAGGTGGTTGAATCGGCCTCAGAACATCTCCATCCTCACACTCTGTGAATCTACCACCGGGGCATGCAGCAGGAAATATGAGATGACGTCCGACACCTGGCTCTCTAAACAGAACGAGGAGCCAGTGTTTTCCAGAGATGGAAGCAAGTTCTTCATGACTGTTCCTGTTAAACAAGGTGGAAGAGGAGAATTCCACCACATAGCTATGTTCCTGGTCCAGAGTAAAAGCGAGCAAATTACGGTGCGGCATCTGACATCAGGAAACTGGGAAGTGATAAGGATCTTGGCCTATGATGAAACAACTCAAAAAATTTACTTTCTGAGCACAGAATCTTCTCCCCAAGGGAGGCAACTATACAGATTTTTCATTACTCATTTACCGCTTCATATTTGA
Peptide sequence:
MINDSLVPNMIIPRFTGALYPKAKQYPYPKAGQANPSVKLYVVNLYGPTHTLELMPPDIFKSREYYITMVKWVSNTRTVVRWLNRPQNISILTLCESTTGACSRKYEMTSDTWLSKQNEEPVFSRDGSKFFMTVPVKQGGRGEFHHIAMFLVQSKSEQITVRHLTSGNWEVIRILAYDETTQKIYFLSTESSPQGRQLYRFFITHLPLHI
IRESfinder result
IRESfinder score
0.607622049
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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