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mmu_circDnah7b_5165
Basic information of circular RNA
PanCircBase ID:
mmu_circDnah7b_5165
mm39_Chr. Position ID:
chr1|46230810|46307919|+
Gene name:
Dnah7b
Transcript:
ENSMUST00000069293.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
24
Exon/intron indexes:
26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49
Exon/intron offsets:
0,3384,3598,9541,12567,15794,19598,21687,22647,25426,27670,29928,31421,32958,34115,35167,41828,44942,49130,50329,51604,58122,61719,76954
Genomic length:
77109
Exon/intron sizes in nt:
169,103,128,213,99,249,150,183,177,132,225,198,156,169,127,220,873,230,331,347,181,186,164,155
Flanking exon/introns:
chr1:46227845-46230810|chr1:46307919-46316120
Splice length:
5165
Other database IDs:
circAtlas: mmu-Dnah7b_0028
Human Ortholog IDs:
Mature spliced Sequence:
GACCTTATTTGGAGCACTTCACCTGCACCTTGGAGGAGCACCTGAGGGCCCAGCTGGCACTGGAAAGACAGAAACAACCAAGGATTTAGCAAAAGCAGTTGCCAAACAGTGTGTCGTTTTCAACTGCTCTGATGGGCTGGATTATTTGGCCTTAGGAAAATTCTTTAAGGGACTGTTATCCTGTGGAGCCTGGGCTTGCTTTGATGAGTTTAACAGAATTGATTTGGAAGTACTTTCTGTGGTTGCTCAACAAATCCTTACCATCCAGAGAGGTATTAATGCAGGTACAGAGCTCCTAGTGTTTGAAGGAACAGAACTAAAACTTGACCCCACATGTGCTGTCTTCATAACAATGAACCCTGGGTATGCTGGGCGGTCAGAGCTGCCAGACAATCTGAAGGCTCTGTTCCGGACAGTGGCCATGATGGTGCCTGACTACGCCATGATTGCCGAGATCGTGCTGTACTCTTGTGGCTTTGTCACTGCGAGGCCGCTGTCCATAAAGATTGTGGCGACATACCGCTTGTGCTCAGAGCAACTGTCCTCCCAGCATCACTATAACTATGGGATGCGAGCTGTGAAGTCTGTGCTCACAGCTGCTGGCAATCTGAAGCTGAAATATCCAAATGAAAATGAAGAAATTTTGCTACTTAGATCTATTATTGATGTAAATCTGCCAAAGTTTTTATCCCATGATTTGCCACTCTTTGAGGGAATTACCTCAGATTTGTTTCCTGGGGTGAAATTACCAAAGCCAGATTACAATGAACTGCTGGCCGCCATCAGAGAAAACTGCCACACCATGAATTTGCAAATGACCGACTTCTTCTCTGAGAAGATCCTTCAGATCTACGAGATGATGATTGTGCGTCATGGTTTCATGATTGTTGGAGAACCATTTGGAGGGAAGACCAGTGCATATCGTGTTCTAGCTGGAGCATTAAATGACATTTGTGAAAAGGGACTAATGGAAGAAAACAAGGTTCAAATAACTGTTTTAAATCCCAAGTCTGTCACCATGGGCCAGCTTTATGGGCAGTTTGACTTGGTTTCCCACGAGTGGTCTGATGGGATCCTGGCTGTCAGCTTTAGAGCGTTCGCAGCTTCCTCGACTCCAGACAGGAAGTGGTTAATCTTTGATGGGCCAGTTGATGCCGTGTGGATTGAGAACATGAACACTGTGCTGGATGACAACAAGAAGCTGTGTCTGATGAGTGGGGAGATTATTCAAATGTCACCACAAATGAACCTGATTTTTGAACCGATGGATCTGGAAGTCGCCTCTCCTGCCACTGTTTCCCGGTGTGGCATGATCTACATGGAGCCTCACATGCTAGGCTGGAGACCACTGATGGTGTCCTGGATAAACACGTTACCACAGTCAGTCAGTATCATTCAGAAGGAATTTATAGAAGGCTTGTTTGATAGAATGGTCCCTCTCTCTGTTGAATTCATCAGAAGGCATACAAAGGAGCTCTCTCCTACTTCAGATACAAACTTGGTCCAATCCTTAATGAATCTCATAGACTGTTTTATGGATGACTTTGCTGATGAAAACAAACAAAAGGAAAGAAATGACCGAGAAAGTTTCTCTTTGCTGGAGGGCATTTTTATGTTTTCATTGGCCTGGTCTGTTGGTGCAACTTGTACAGATGATGATCGTCTGAAATTCGATAAGATCCTCCGAGAGCTAATGGAAGGTCCAATTTCAGACCTAACTCGAAATAAGTTTAAGTTACTGAGTGGTACTGAGCAAACATCCTCAAAGGTGTTTATAGTGCCATTTCCTGAGAAGGGAACAATCTACGAATATCAGTTTATCCCGGAGGGCTTAGGAAGATGGGATAAATGGATAAAGAAATTGGCAGATACTCCTCCAATTCCCAAAGATGTACAGTTTATTGAGATCATTGTGCCAACTCTCGACACAATCCGTTACTCTGCTCTAATGCATTTACTGACCACTCATCAAAAGCCTTCAATATTTGTAGGACCAACAGGAACTGGAAAGAGTGTTTATATCATTAATTTTCTTTTAAATCAACTCAATAAGGACATCTACAAACCTCTTATAGTAAACTTCTCAGCCCAAACTACAGCAGCCCAAACTCAGAATATCATCATGTCGAAACTGGACAAAAGAAGAAAAGGAGTTTTTGGCCCTCCTTTAGGCAAGAGAATGATAGTCTTTGTAGATGATGTGAATATGCCTGCCCGAGAGGTCTATGGGGCTCAGCCTCCCATTGAATTACTTAGACAGTGGTTAGATCATTGGAATTGGTACGACCTCAAAGATTGCTCTGTGATTAAACTAGTGGACATCCAGATCATGTGCGCTATGGGTCCTCCAGGTGGTGGCCGAAATCCAATAACTCCTCGTTACATGAGACATTTCAATATTGTAACCATCAATGAATTTAGTGACAAGTCTATGTTCACAATCTTCTCCAGAATCCTGGCCTGGCATCTAAGAACCTGTTATAAGTTTCCAGATGATTTTCTAGACTTGACTACACAAATAGTGAATGGTACAATGGCCCTGTACAAAGATGCCATGAAGAATCTCTTACCTACTCCAGCTAAATCTCACTATTTGTTCAACCTTCGAGATTTCTCCCGAGTCATACAAGGTGTTTGTTTGTCAAGACCAGAAACAGCAGAAAACAAAGAGGCCATTAAACGCCTGTGGGTTCATGAGGTCCTCAGAGTATATTATGATCGCCTTGTGGATAATGCTGACAGAAGCTGGCTTATTCACTACATACAAGAAATTCTGAAAAATTACATGCAGGAAGATTTCCATGACCTATTTAAAAACTTGGATTTTAATCAGGATGGCACTGTTGAAGAAGACGATTTAAGAAGTTTAATGTTTTGTGATTTCCATGATCCTAAGAGGGAAGATTTTGGCTACAGAGAAATTGCAAATGTGGATGCTCTCAGGATGATTGTCGAAGGCCATCTAGATGAATATAACAACATGAGCAAAAAGCCCATGAATCTCGTCTTGTTCAGATTTGCCATAGAACACATAAGCAGAATTTCTCGAATCTTGAAGCAGCCACGGAGCCACGCCCTCCTGGTGGGGGTGGGCGGGAGCGGAAGGCAGTCAGTCACCAGACTTGCTGCACACATGGCTGATTATTCACTATTTCAGGTGGAAATCTCCAAGGGCTACGGTAGCCATGAGTGGCATGAAGATCTGAAAGTGATCTTAAGAAAATGTGCAGAGAATGACATGCAGGGGGTCTTCCTGTTCACAGATACACAAATAAAAAGAGAGTCATTTCTAGAAGATGTCAACAATCTCCTAAACGCCGGGGAGGTTCCAAACCTCTTTGCTTTAGATGAAAAGCAAGAAATATGTGAAAAGATGCGTCAGTTAGATCGCCAGCGGGATAAAACTAGACAGACAGATGGGAGCCCCATAGCTCTTTTCAACATGTTTATTGACCGCTGCCGCAACCAGCTGCATGTGGTCTTGGCCATGAGCCCCATCGGAGACGCATTTCGGATTCGTCTTCGGAAATTCCCTGCTCTTGTTAACTGCTGTACCATTGACTGGTTTCAGTCATGGCCAGAAGATGCTCTGGAAGCAGTTGCTTCAAGGTTCCTGGAAGACATTGAGATGTCAGAGGAAATCCAAGAAGGCTGTATTGACATGTGTAAAAGGTTCCACACGTCTACTATCAACTTATCAACGTCCTTCCACAATGAACTTCAAAGATATAATTATGTGACTCCCACCTCCTACCTGGAATTGATCTCTACCTTCAAACTGTTGTTAGAAAAGAAAAGAAATGAAGTGATGAAAATGAAAAGGAGATACGAGGTGGGTTTAGATAAACTGGATTCAGCTTCGTCCCAGGTGGCAACCATGCAGAGTGAGCTGGAGGCACTGCATCCGCAGTTAAAAGTTGCCAGCAGAGAGGTTGACGAAATGATGATAATAATTGAGAGAGAGTCCATGGAGGTAGCCAAAACTGAGAAAATCGTGAAAGCTGATGAAACAGTAGCGAACGATCAAGCCATGGCAGCCAAAGCCATCAAAGATGAATGCGATGCCGACTTGGCTGAAGCCCTACCCATCCTGGAATCTGCACTGGCTGCCCTTGATACCCTGACCGCGCAGGATATCACAGTTGTGAAGTCCATGAAGAGTCCTCCTGCTGGCGTCAAGCTTGTCATGGAAGCTATCTGCATATTGAAAGGTATCAAAGCCGACAAAATCCCTGACCCAACAGGTTCAGGGAAGAAAATTGAGGATTTCTGGGGCCCTGCTAAGAGACTTCTTGGTGACATAAGGTTTCTGCAGTCACTTCATGAGTATGACAAGGACAATATTCCTCCTGCTTATATGAATATCATAAGGAAGAGTTATATCCCCAACCCAGACTTTGTTCCAGAGAAGATCCGGAATGCTTCAACAGCTGCTGAGGGTCTGTGCAAGTGGGTCATCGCAATGGACTCCTATGACAAAGTGGCAAAAATTGTAGCTCCCAAAAAGATAAAGCTGGCTGCAGCCGAAGGGAAGCTGAGGATTGCTATGGAAGGCCTTAGAAAGAAGCAGGCTGCCCTGTATGAGGTTCAGGACAAGTTGGCCAAACTCCAAGACACACTTGAGTTGAATAAGCAGAAGAAAGCAGACTTGGAAAACCAGGTTGACTTGTGCAGCAAAAAGCTAGAACGCGCAGAGCAGCTGATCGGGGGCCTGGGAGGTGAGAAAACCCGATGGAGCAACTCCGCGCTGGAGCTTGGGCATCTGTACATCAACCTGACGGGAGATATCCTCATCTCCTCAGGGGTTGTCGCCTACCTGGGAGCCTTTACATCTAACTACAGACAGAATCAAACCCAGGAGTGGTCACAGTCGTGTAAAGAAAGAGACATCCCCTGCTCTGATGACTACTCTCTTATGGGCACACTGGGAGAGGCCGTGACGATTCGAGCTTGGAATATCGCTGGGTTACCCTCTGACTCTTTCTCCATTGATAATGGGATCATTATAATGAATGCAAGAAGGTGGCCTCTGATGATAGACCCTCAAGGTCAGGCTAATAAGTGGATCAAGAACATGGAGAAAACCAATAGCCTTCAGCTCATTAAACTAAGTGACCCTGACTATGTCAGAACTCTGGAAAACTGTATCCAGTTTGGAACTCCTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGAGAAAACCAATAGCCTTCAGC
59.87
TCTGTCTTTCCAGTGCCAGC
60.25
161
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGAGAAAACCAATAGCCTTCAGC
59.87
CTGTCTTTCCAGTGCCAGCT
60.25
160
PCR template sequence:
ATCAAGAACATGGAGAAAACCAATAGCCTTCAGCTCATTAAACTAAGTGACCCTGACTATGTCAGAACTCTGGAAAACTGTATCCAGTTTGGAACTCCTGGACCTTATTTGGAGCACTTCACCTGCACCTTGGAGGAGCACCTGAGGGCCCAGCTGGCACTGGAAAGACAGAAACAACCAAGGATTTAGCAAAAGCAGTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
38
Interacting miRNAs (#binding sites)
mmu-miR-135a-5p(2), mmu-miR-3105-3p(2), mmu-miR-338-3p(2), mmu-miR-9-5p(1), mmu-miR-134-5p(1), mmu-miR-200a-3p(1), mmu-miR-7b-5p(1), mmu-miR-103-3p(1), mmu-miR-204-5p(1), mmu-miR-18a-5p(1), mmu-miR-7a-5p(1), mmu-miR-132-3p(1), mmu-miR-203-3p(1), mmu-miR-320-3p(1), mmu-miR-324-5p(1), mmu-miR-495-3p(1), mmu-miR-351-5p(1), mmu-miR-96-5p(1), mmu-miR-183-5p(1), mmu-miR-541-5p(1), mmu-miR-297a-5p(1), mmu-miR-107-3p(1), mmu-miR-705(1), mmu-miR-680(1), mmu-miR-802-5p(1), mmu-miR-1187(1), mmu-miR-1198-5p(1), mmu-miR-129-5p(1), mmu-miR-673-5p(1), mmu-miR-5101(1), mmu-miR-539-5p(1), mmu-miR-335-3p(1), mmu-miR-350-3p(1), mmu-miR-670-5p(1), mmu-miR-490-3p(1), mmu-miR-1904(1), mmu-miR-193b-3p(1), mmu-miR-344-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTGGAACTCCTGGACCTTATTTGGA
siRNA sets
ATAAGGTCCAGGAGTTCCA, AAATAAGGTCCAGGAGTTC, AATAAGGTCCAGGAGTTCC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCDNAH7B_5165_ORF_1
1.0966
0.184536591
1
4902
ORF sequence:
ATGAACCCTGGGTATGCTGGGCGGTCAGAGCTGCCAGACAATCTGAAGGCTCTGTTCCGGACAGTGGCCATGATGGTGCCTGACTACGCCATGATTGCCGAGATCGTGCTGTACTCTTGTGGCTTTGTCACTGCGAGGCCGCTGTCCATAAAGATTGTGGCGACATACCGCTTGTGCTCAGAGCAACTGTCCTCCCAGCATCACTATAACTATGGGATGCGAGCTGTGAAGTCTGTGCTCACAGCTGCTGGCAATCTGAAGCTGAAATATCCAAATGAAAATGAAGAAATTTTGCTACTTAGATCTATTATTGATGTAAATCTGCCAAAGTTTTTATCCCATGATTTGCCACTCTTTGAGGGAATTACCTCAGATTTGTTTCCTGGGGTGAAATTACCAAAGCCAGATTACAATGAACTGCTGGCCGCCATCAGAGAAAACTGCCACACCATGAATTTGCAAATGACCGACTTCTTCTCTGAGAAGATCCTTCAGATCTACGAGATGATGATTGTGCGTCATGGTTTCATGATTGTTGGAGAACCATTTGGAGGGAAGACCAGTGCATATCGTGTTCTAGCTGGAGCATTAAATGACATTTGTGAAAAGGGACTAATGGAAGAAAACAAGGTTCAAATAACTGTTTTAAATCCCAAGTCTGTCACCATGGGCCAGCTTTATGGGCAGTTTGACTTGGTTTCCCACGAGTGGTCTGATGGGATCCTGGCTGTCAGCTTTAGAGCGTTCGCAGCTTCCTCGACTCCAGACAGGAAGTGGTTAATCTTTGATGGGCCAGTTGATGCCGTGTGGATTGAGAACATGAACACTGTGCTGGATGACAACAAGAAGCTGTGTCTGATGAGTGGGGAGATTATTCAAATGTCACCACAAATGAACCTGATTTTTGAACCGATGGATCTGGAAGTCGCCTCTCCTGCCACTGTTTCCCGGTGTGGCATGATCTACATGGAGCCTCACATGCTAGGCTGGAGACCACTGATGGTGTCCTGGATAAACACGTTACCACAGTCAGTCAGTATCATTCAGAAGGAATTTATAGAAGGCTTGTTTGATAGAATGGTCCCTCTCTCTGTTGAATTCATCAGAAGGCATACAAAGGAGCTCTCTCCTACTTCAGATACAAACTTGGTCCAATCCTTAATGAATCTCATAGACTGTTTTATGGATGACTTTGCTGATGAAAACAAACAAAAGGAAAGAAATGACCGAGAAAGTTTCTCTTTGCTGGAGGGCATTTTTATGTTTTCATTGGCCTGGTCTGTTGGTGCAACTTGTACAGATGATGATCGTCTGAAATTCGATAAGATCCTCCGAGAGCTAATGGAAGGTCCAATTTCAGACCTAACTCGAAATAAGTTTAAGTTACTGAGTGGTACTGAGCAAACATCCTCAAAGGTGTTTATAGTGCCATTTCCTGAGAAGGGAACAATCTACGAATATCAGTTTATCCCGGAGGGCTTAGGAAGATGGGATAAATGGATAAAGAAATTGGCAGATACTCCTCCAATTCCCAAAGATGTACAGTTTATTGAGATCATTGTGCCAACTCTCGACACAATCCGTTACTCTGCTCTAATGCATTTACTGACCACTCATCAAAAGCCTTCAATATTTGTAGGACCAACAGGAACTGGAAAGAGTGTTTATATCATTAATTTTCTTTTAAATCAACTCAATAAGGACATCTACAAACCTCTTATAGTAAACTTCTCAGCCCAAACTACAGCAGCCCAAACTCAGAATATCATCATGTCGAAACTGGACAAAAGAAGAAAAGGAGTTTTTGGCCCTCCTTTAGGCAAGAGAATGATAGTCTTTGTAGATGATGTGAATATGCCTGCCCGAGAGGTCTATGGGGCTCAGCCTCCCATTGAATTACTTAGACAGTGGTTAGATCATTGGAATTGGTACGACCTCAAAGATTGCTCTGTGATTAAACTAGTGGACATCCAGATCATGTGCGCTATGGGTCCTCCAGGTGGTGGCCGAAATCCAATAACTCCTCGTTACATGAGACATTTCAATATTGTAACCATCAATGAATTTAGTGACAAGTCTATGTTCACAATCTTCTCCAGAATCCTGGCCTGGCATCTAAGAACCTGTTATAAGTTTCCAGATGATTTTCTAGACTTGACTACACAAATAGTGAATGGTACAATGGCCCTGTACAAAGATGCCATGAAGAATCTCTTACCTACTCCAGCTAAATCTCACTATTTGTTCAACCTTCGAGATTTCTCCCGAGTCATACAAGGTGTTTGTTTGTCAAGACCAGAAACAGCAGAAAACAAAGAGGCCATTAAACGCCTGTGGGTTCATGAGGTCCTCAGAGTATATTATGATCGCCTTGTGGATAATGCTGACAGAAGCTGGCTTATTCACTACATACAAGAAATTCTGAAAAATTACATGCAGGAAGATTTCCATGACCTATTTAAAAACTTGGATTTTAATCAGGATGGCACTGTTGAAGAAGACGATTTAAGAAGTTTAATGTTTTGTGATTTCCATGATCCTAAGAGGGAAGATTTTGGCTACAGAGAAATTGCAAATGTGGATGCTCTCAGGATGATTGTCGAAGGCCATCTAGATGAATATAACAACATGAGCAAAAAGCCCATGAATCTCGTCTTGTTCAGATTTGCCATAGAACACATAAGCAGAATTTCTCGAATCTTGAAGCAGCCACGGAGCCACGCCCTCCTGGTGGGGGTGGGCGGGAGCGGAAGGCAGTCAGTCACCAGACTTGCTGCACACATGGCTGATTATTCACTATTTCAGGTGGAAATCTCCAAGGGCTACGGTAGCCATGAGTGGCATGAAGATCTGAAAGTGATCTTAAGAAAATGTGCAGAGAATGACATGCAGGGGGTCTTCCTGTTCACAGATACACAAATAAAAAGAGAGTCATTTCTAGAAGATGTCAACAATCTCCTAAACGCCGGGGAGGTTCCAAACCTCTTTGCTTTAGATGAAAAGCAAGAAATATGTGAAAAGATGCGTCAGTTAGATCGCCAGCGGGATAAAACTAGACAGACAGATGGGAGCCCCATAGCTCTTTTCAACATGTTTATTGACCGCTGCCGCAACCAGCTGCATGTGGTCTTGGCCATGAGCCCCATCGGAGACGCATTTCGGATTCGTCTTCGGAAATTCCCTGCTCTTGTTAACTGCTGTACCATTGACTGGTTTCAGTCATGGCCAGAAGATGCTCTGGAAGCAGTTGCTTCAAGGTTCCTGGAAGACATTGAGATGTCAGAGGAAATCCAAGAAGGCTGTATTGACATGTGTAAAAGGTTCCACACGTCTACTATCAACTTATCAACGTCCTTCCACAATGAACTTCAAAGATATAATTATGTGACTCCCACCTCCTACCTGGAATTGATCTCTACCTTCAAACTGTTGTTAGAAAAGAAAAGAAATGAAGTGATGAAAATGAAAAGGAGATACGAGGTGGGTTTAGATAAACTGGATTCAGCTTCGTCCCAGGTGGCAACCATGCAGAGTGAGCTGGAGGCACTGCATCCGCAGTTAAAAGTTGCCAGCAGAGAGGTTGACGAAATGATGATAATAATTGAGAGAGAGTCCATGGAGGTAGCCAAAACTGAGAAAATCGTGAAAGCTGATGAAACAGTAGCGAACGATCAAGCCATGGCAGCCAAAGCCATCAAAGATGAATGCGATGCCGACTTGGCTGAAGCCCTACCCATCCTGGAATCTGCACTGGCTGCCCTTGATACCCTGACCGCGCAGGATATCACAGTTGTGAAGTCCATGAAGAGTCCTCCTGCTGGCGTCAAGCTTGTCATGGAAGCTATCTGCATATTGAAAGGTATCAAAGCCGACAAAATCCCTGACCCAACAGGTTCAGGGAAGAAAATTGAGGATTTCTGGGGCCCTGCTAAGAGACTTCTTGGTGACATAAGGTTTCTGCAGTCACTTCATGAGTATGACAAGGACAATATTCCTCCTGCTTATATGAATATCATAAGGAAGAGTTATATCCCCAACCCAGACTTTGTTCCAGAGAAGATCCGGAATGCTTCAACAGCTGCTGAGGGTCTGTGCAAGTGGGTCATCGCAATGGACTCCTATGACAAAGTGGCAAAAATTGTAGCTCCCAAAAAGATAAAGCTGGCTGCAGCCGAAGGGAAGCTGAGGATTGCTATGGAAGGCCTTAGAAAGAAGCAGGCTGCCCTGTATGAGGTTCAGGACAAGTTGGCCAAACTCCAAGACACACTTGAGTTGAATAAGCAGAAGAAAGCAGACTTGGAAAACCAGGTTGACTTGTGCAGCAAAAAGCTAGAACGCGCAGAGCAGCTGATCGGGGGCCTGGGAGGTGAGAAAACCCGATGGAGCAACTCCGCGCTGGAGCTTGGGCATCTGTACATCAACCTGACGGGAGATATCCTCATCTCCTCAGGGGTTGTCGCCTACCTGGGAGCCTTTACATCTAACTACAGACAGAATCAAACCCAGGAGTGGTCACAGTCGTGTAAAGAAAGAGACATCCCCTGCTCTGATGACTACTCTCTTATGGGCACACTGGGAGAGGCCGTGACGATTCGAGCTTGGAATATCGCTGGGTTACCCTCTGACTCTTTCTCCATTGATAATGGGATCATTATAATGAATGCAAGAAGGTGGCCTCTGATGATAGACCCTCAAGGTCAGGCTAATAAGTGGATCAAGAACATGGAGAAAACCAATAGCCTTCAGCTCATTAAACTAAGTGACCCTGACTATGTCAGAACTCTGGAAAACTGTATCCAGTTTGGAACTCCTGGACCTTATTTGGAGCACTTCACCTGCACCTTGGAGGAGCACCTGAGGGCCCAGCTGGCACTGGAAAGACAGAAACAACCAAGGATTTAG
Peptide sequence:
MNPGYAGRSELPDNLKALFRTVAMMVPDYAMIAEIVLYSCGFVTARPLSIKIVATYRLCSEQLSSQHHYNYGMRAVKSVLTAAGNLKLKYPNENEEILLLRSIIDVNLPKFLSHDLPLFEGITSDLFPGVKLPKPDYNELLAAIRENCHTMNLQMTDFFSEKILQIYEMMIVRHGFMIVGEPFGGKTSAYRVLAGALNDICEKGLMEENKVQITVLNPKSVTMGQLYGQFDLVSHEWSDGILAVSFRAFAASSTPDRKWLIFDGPVDAVWIENMNTVLDDNKKLCLMSGEIIQMSPQMNLIFEPMDLEVASPATVSRCGMIYMEPHMLGWRPLMVSWINTLPQSVSIIQKEFIEGLFDRMVPLSVEFIRRHTKELSPTSDTNLVQSLMNLIDCFMDDFADENKQKERNDRESFSLLEGIFMFSLAWSVGATCTDDDRLKFDKILRELMEGPISDLTRNKFKLLSGTEQTSSKVFIVPFPEKGTIYEYQFIPEGLGRWDKWIKKLADTPPIPKDVQFIEIIVPTLDTIRYSALMHLLTTHQKPSIFVGPTGTGKSVYIINFLLNQLNKDIYKPLIVNFSAQTTAAQTQNIIMSKLDKRRKGVFGPPLGKRMIVFVDDVNMPAREVYGAQPPIELLRQWLDHWNWYDLKDCSVIKLVDIQIMCAMGPPGGGRNPITPRYMRHFNIVTINEFSDKSMFTIFSRILAWHLRTCYKFPDDFLDLTTQIVNGTMALYKDAMKNLLPTPAKSHYLFNLRDFSRVIQGVCLSRPETAENKEAIKRLWVHEVLRVYYDRLVDNADRSWLIHYIQEILKNYMQEDFHDLFKNLDFNQDGTVEEDDLRSLMFCDFHDPKREDFGYREIANVDALRMIVEGHLDEYNNMSKKPMNLVLFRFAIEHISRISRILKQPRSHALLVGVGGSGRQSVTRLAAHMADYSLFQVEISKGYGSHEWHEDLKVILRKCAENDMQGVFLFTDTQIKRESFLEDVNNLLNAGEVPNLFALDEKQEICEKMRQLDRQRDKTRQTDGSPIALFNMFIDRCRNQLHVVLAMSPIGDAFRIRLRKFPALVNCCTIDWFQSWPEDALEAVASRFLEDIEMSEEIQEGCIDMCKRFHTSTINLSTSFHNELQRYNYVTPTSYLELISTFKLLLEKKRNEVMKMKRRYEVGLDKLDSASSQVATMQSELEALHPQLKVASREVDEMMIIIERESMEVAKTEKIVKADETVANDQAMAAKAIKDECDADLAEALPILESALAALDTLTAQDITVVKSMKSPPAGVKLVMEAICILKGIKADKIPDPTGSGKKIEDFWGPAKRLLGDIRFLQSLHEYDKDNIPPAYMNIIRKSYIPNPDFVPEKIRNASTAAEGLCKWVIAMDSYDKVAKIVAPKKIKLAAAEGKLRIAMEGLRKKQAALYEVQDKLAKLQDTLELNKQKKADLENQVDLCSKKLERAEQLIGGLGGEKTRWSNSALELGHLYINLTGDILISSGVVAYLGAFTSNYRQNQTQEWSQSCKERDIPCSDDYSLMGTLGEAVTIRAWNIAGLPSDSFSIDNGIIIMNARRWPLMIDPQGQANKWIKNMEKTNSLQLIKLSDPDYVRTLENCIQFGTPGPYLEHFTCTLEEHLRAQLALERQKQPRI
IRESfinder result
IRESfinder score
0.62002792
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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