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mmu_circDnah2_4953
Basic information of circular RNA
PanCircBase ID:
mmu_circDnah2_4953
mm39_Chr. Position ID:
chr11|69320127|69350126|-
Gene name:
Dnah2
Transcript:
ENSMUST00000035539.12
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
33
Exon/intron indexes:
76,75,74,73,72,71,70,69,68,67,66,65,64,63,62,61,60,59,58,57,56,55,54,53,52,51,50,49,48,47,46,45,44
Exon/intron offsets:
0,1172,1448,1757,3552,5902,6252,6531,6836,7182,7479,7620,7869,8495,16977,17273,18494,18812,19090,21697,21920,23105,23516,23859,24474,24760,25026,26489,28039,28684,29058,29564,29846
Genomic length:
29999
Exon/intron sizes in nt:
1,91,18,41,49,18,71,27,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr11:69314881-69320127|chr11:69350126-69354141
Splice length:
4953
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAACCCAGCCGATGCCGAGAACTACTCCTTTATGGTGGAGATGACCTTTGTGTTCAGCATGATCTGGTCTGTGTGTGCCTCTGTGGACGAGGACGGACGCAAGAAGATTGACAGCTACCTTCGAGAAATCGAGGGCTCCTTTCCCAATAAGGACACAGTGTATGAATACTACGTGAACCCCAAGATGCGGACTTGGACGTCATTTGAGGAGAAGCTCCCCAAGAGCTGGCGTTATCCTCCCAACGCCCCTTTCTATAAGATCATGGTACCTACTGTTGATACTGTGCGGTATAACTACTTAGTGAGCACCCTGGTGGCCAACCAGAATCCTGTCTTACTGGTGGGTCCTGTGGGAACTGGAAAGACCTCCATAGCCCAGAGTGTTCTCCAGTCCTTGCCCTCCAGCCAGTGGTCAGTGCTCGTCGTCAACATGTCCGCACAGACCACGTCAAACAATGTGCAGAGCATCATTGAGAGCAGAGTAGAGAAGCGGACCAAGGGTGTGTATGTGCCATTCGGGGGCAAAAGCATGATTACTTTTATGGATGACCTAAACATGCCTGCCAAGGACATGTTTGGGTCCCAGCCGCCCCTGGAGCTGATTCGCCTCTGGATTGACTACGGCTTCTGGTACGATCGTGTGAAGCAGAGCATCAAGCACATCCGAGACATGTTCCTGATGGCTGCCATGGGCCCTCCTGGGGGTGGACGGACTGTTATCTCCCCAAGGCTGCAGAGTCGCTTCAACATTATCAACATGACCTTCCCCACGGAATCCCAGATCATCCGCATATTTGGCACCATGATCAACCAGAAGCTCCAGGACTTTGAAGAAGAGGTGAAGCCCATTGGGAATGTGGTAACAGAGGCCACCCTGGACGTTTACAATACGGTGGTACAGCGCTTCCTGCCCACCCCGGCGAAGATCCATTACCTCTTCAACCTCCGGGACATCTCCAAGGTCTTCCAGGGCATGCTTAGAGCCAACAAGGACTTTCATGATACCAAAGCCAGCATCACAAGACTCTGGATTCATGAGTGTTTCAGAGTCTTCTCTGACAGACTGGTCGATACAGCAGACATGGAAGCCTTTATGGGCATCTTAAGTGACAAACTCGGTACCTTCTTTGACCTCACGTTTCATCATCTCTGTCCCAACAAACGCCCTCCCATCTTTGGGGACTTCCTGAAGGAGCCCAAGGTCTATGAAGACCTGGTAGACCTGACAGTATTGAAGACAGCCATGGAGACGGCCCTGAATGAGTACAATCTGTCTCCTTCGGTTGTGCCAATGCAGCTGGTGCTCTTCCGAGAGGCCATTGAACACATCACTCGGATCGTGCGTGTGATCGGACAGCCCCGAGGCAACATGTTGCTGGTGGGGATCGGGGGCAGCGGGAGGCAGAGTCTGGCCCGCTTGGCGTCTTCCATCTGCGATTATAACACGTTCCAGATCGAGGTCACCAAGCACTACCGCAAACAGGAGTTCCGAGACGATATCAAGCGCTTGTATCGACAGGCAGGGGTAGAACTCCAGACCACGTCTTTCCTTTTCGTGGACACCCAGATAGCTGACGAATCCTTCCTGGAAGACATCAACAACATCCTTAGCTCGGGCGAAGTCCCCAATCTCTACAAGTCTGACGAATTTGAAGAGATCCAGAACCATATCATAGACCAGGCCCGGGCAGAACAGATACCAGAATCCTCGGACAGCCTCTTTGCATACCTCATCGAGCGCGTGCGGAACAACCTGCACATTGTGCTCTGTCTAAGTCCCGTGGGAGACCCCTTCAGGAATTGGATTCGCCAGTACCCAGCCTTAGTAAACTGTACAACCATCAACTGGTTCTCAGAGTGGCCCCGAGAGGCCTTGCTAGAGGTGGCTGAGAAGTACATTATAGGAGTGGACTTGGGGACACAGGAGAATATCCACAGGAAAGTGGCCCAAATCTTTGTCACCATGCACTGGTCAGTGGCTCAGTATTCCCAGAAGATGCTGTTGGAACTGCGGAGATACAACTATGTCACACCCACAAACTACCTGGAGCTCGTGTCTGGATATAAAAAGCTTCTGGGAGAAAAGCGGCAGGAGCTGCTGGACCAAGCCAATAAGCTTCGAACTGGATTGTTTAAGATTGACGAAACTAGGGAGAAAGTCGAAGTGATGTCCTTGGAGCTGGAGGACGCCAAGAAAAAAGTGGCAGAGTTCCAGAAGCAGTGCGAAGAATACCTGGTCATCATTGTGCAGCAGAAGCGGGAAGCAGATGAGCAGCAGAAGGCCGTCACTGCCAATAGTGAGAAGATCGCTATTGAGGAGGTCAAGTGCCAGGCGCTGGCCGACAATGCCCAGAAGGATCTAGAGGAAGCATTGCCCGCCCTTGAAGAAGCCATGCGGGCCCTAGAGTCTCTGAACAAGAAGGACATAGGTGAGATCAAGTCCTACGGACGACCCCCTGCGCAGGTGGAAATTGTAATGCAGGCAGTCATGATTCTTCGAGGCAATGAGCCCACGTGGGCAGAAGCAAAGCGACAGTTAGGGGAGCAGAACTTCATCAAGTCATTGATCAACTTTGATAAAGACAACATCTCAGATAAGGTATTGAAGAAGATCGGGGCCTACTGCGCCCAGCCCGACTTCCAGCCTGATATCATTGGCAGAGTCTCCCTGGCTGCTAAGTCCCTCTGCATGTGGGTGCGGGCCATGGAGTTGTACGGGCGTCTGTATCGAGTGGTAGAGCCTAAGCGGATCCGAATGAACGCCGCCATGGCCCAGCTTCAGGAGAAGCAAGCAGCCCTAGCTGAAGCCCAGGAAAAGCTGCGAGAGGTGGCAGAGAAATTGGAGATGCTGAAGAAACAGTATGATGAGAAGCTGGCACAGAAGGAGGAGCTTCGAAAGAAATCGGAGGAGATGGAGCTGAAGCTGGAGCGAGCAGGAATGTTGGTGTCTGGGCTAGCTGGTGAAAAGGCACGATGGGAAGAGACTGTGCAGGGCCTGGAGGAGGATCTGGGTTACCTGGTGGGCGACTGTCTGATTGCAGCTGCGTTCTTGTCCTACATGGGACCCTTTCTGACCAATTACCGGGATGAGATTATCAATCAAATCTGGATCAGGAAGATCAGGGAGCTTCAGGTTCCCTGTTCACCTCGCTTTGCCATTGATAACTTCCTGACCAATCCCACCAAAGTCCGGGACTGGAACATCCAGGGGTTGCCCTCAGATGCCTTCTCCACAGAGAATGGCATCATCGTCACCAGGGGCAACAGGTGGGCCCTCATGATCGATCCTCAGGGCCAAGCCCTCAAGTGGATTAAGAACATGGAAGGAAACCAGGGCCTTAAAATCATCGACCTGCAGATGCATGACTACCTTCGAGTTCTAGAACATGCCATCCAGTTTGGATTTCCAGTGCTACTCCAGAATGTGCAGGAGTATCTGGACCCCACGCTCAACCCAGTGCTCAACAAATCTGTAGCTCGAATTGGTGGTCGGATGCTGATTCGAATTGGTGACAAGGAGGTGGAATACAATCCCAATTTCCGTTTCTACCTCACCACCAAGCTCTCCAATCCCCACTATAATCCAGAGACTTCGGCTAAGACCACCATTGTCAACTTCGCTGTAAAGGAGCAGGGCCTGGAAGCCCAGCTGCTGGGCATTGTGGTTCGGAAGGAGCGACCAGAGCTGGAGGAGCAGAAGGACTCTCTGGTCATCAACATCGCTGCAGGAAAGAGAAAGCTCAAAGAACTAGAGGATGAGATCCTGCGCTTGTTGAATGAGGCCACAGGCTCTCTGCTTGATGACGTGCAGCTGGTGAATACCCTCCAGACATCCAAGATAACGGCCACCGAGGTGACCGAGCAACTGGAGACCAGTGAGACCACAGAGATCAACATTGACTTGGCCCGAGAGGCTTACCGTCCGTGTGCCCAGCGGGCCTCGGTGCTGTTCTTTGTGCTCAATGACATGGGCCGCATTGACCCCATGTACCAGTTCTCCCTGGACGCCTACATCGGCCTCTTTATCCTCAGCATTGACAAGAGCCACCGCAGCAATAAGCTGGAGGACCGCATCGAGTACCTGAATGACTACCACACCTATGCTGTCTACAGGTACACCTGCCGAACCCTTTTTGAGCGCCACAAGCTTCTGTTCAGTTTTCACATGTGCGCCAAAATCCTGGAGACGTCCGGCAAGCTCAACATGGATGAGTACAACTTCTTCCTGCGTGGGGGTGTGGTCCTGGATCGTGAAGGCCAAATGGACAATCCATGTACCAGTTGGCTGGCAGATGCCTACTGGGATAATATCACAGAACTGGACAAACTGACCAACTTCCATGGGCTCATGAACTCCTTTGAGCAGTACCCTCGGGACTGGCACCTGTGGTACACCAACTCTTCCCCGGAGAAGGCCATGCTGCCAGGTGAGTGGGAGAATGCGTGCAATGAGATGCAGCGGATGCTGATCGTCCGCTCCCTGCGTCAGGACCGAGTGGCATTCTGTGTTACTTCCTTCATCGTGTCCAACCTTGGCTCTCGATTCATTGAACCGCCTGTGCTAAACATGAAATCGGTGATGGAGGACTCTACCCCGAGATCCCCACTGGTATTCATCCTGTCCCCCGGTGTAGACCCCACCAGCGCTCTGCTTCAGCTGGCGGAGCACACAGGCATGGCCCACCGCTTCCATGCCCTGTCCCTGGGCCAGGGCCAGGCCCCCATTGCTGCTCGGCTTCTTCGAGAGGGTGTGAATCAAGGGCACTGGGTGTTCCTGGCAAACTGCCACCTGTCTCTGTCTTGGATGCCTAATCTGGACAAGTTGGTGGAGCAACTGCAGGTGGAGGACCCTCACCCTTCCTTCCGCCTGTGGCTCAGCTCTAGCCCCCACCCAGACTTCCCAATCTCCATCCTGCAGGCCAGCATCAAGATGACCACAGAGCCACCAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCCACCCAGACTTCCCAATC
60.03
GGCACACACAGACCAGATCA
59.96
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCACCCAGACTTCCCAATC
60.03
AGGCACACACAGACCAGATC
59.68
147
PCR template sequence:
TCACCCTTCCTTCCGCCTGTGGCTCAGCTCTAGCCCCCACCCAGACTTCCCAATCTCCATCCTGCAGGCCAGCATCAAGATGACCACAGAGCCACCAAAGGTGAACCCAGCCGATGCCGAGAACTACTCCTTTATGGTGGAGATGACCTTTGTGTTCAGCATGATCTGGTCTGTGTGTGCCTCTGTGGACGAGGACGGAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
47
Interacting miRNAs (#binding sites)
mmu-miR-196a-5p(3), mmu-miR-207(3), mmu-miR-1904(3), mmu-miR-680(2), mmu-miR-140-5p(1), mmu-miR-15a-5p(1), mmu-miR-7b-5p(1), mmu-miR-429-3p(1), mmu-miR-375-3p(1), mmu-miR-200b-3p(1), mmu-miR-135a-5p(1), mmu-miR-223-3p(1), mmu-miR-200c-3p(1), mmu-miR-92a-3p(1), mmu-miR-322-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-146a-5p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-216a-5p(1), mmu-miR-132-3p(1), mmu-miR-143-3p(1), mmu-miR-25-3p(1), mmu-miR-381-3p(1), mmu-miR-136-5p(1), mmu-miR-127-3p(1), mmu-miR-433-5p(1), mmu-miR-351-5p(1), mmu-miR-363-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-127-5p(1), mmu-miR-96-5p(1), mmu-miR-212-3p(1), mmu-miR-218-5p(1), mmu-miR-98-5p(1), mmu-miR-27a-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-1198-5p(1), mmu-miR-5101(1), mmu-miR-452-3p(1), mmu-miR-188-3p(1), mmu-miR-3470b(1), mmu-miR-146b-5p(1), mmu-miR-202-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AGAGCCACCAAAGGTGAACCCAGCCG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCDNAH2_4953_ORF_1
1.2829
0.49470257
1
9873
ORF sequence:
ATGGTGGAGATGACCTTTGTGTTCAGCATGATCTGGTCTGTGTGTGCCTCTGTGGACGAGGACGGACGCAAGAAGATTGACAGCTACCTTCGAGAAATCGAGGGCTCCTTTCCCAATAAGGACACAGTGTATGAATACTACGTGAACCCCAAGATGCGGACTTGGACGTCATTTGAGGAGAAGCTCCCCAAGAGCTGGCGTTATCCTCCCAACGCCCCTTTCTATAAGATCATGGTACCTACTGTTGATACTGTGCGGTATAACTACTTAGTGAGCACCCTGGTGGCCAACCAGAATCCTGTCTTACTGGTGGGTCCTGTGGGAACTGGAAAGACCTCCATAGCCCAGAGTGTTCTCCAGTCCTTGCCCTCCAGCCAGTGGTCAGTGCTCGTCGTCAACATGTCCGCACAGACCACGTCAAACAATGTGCAGAGCATCATTGAGAGCAGAGTAGAGAAGCGGACCAAGGGTGTGTATGTGCCATTCGGGGGCAAAAGCATGATTACTTTTATGGATGACCTAAACATGCCTGCCAAGGACATGTTTGGGTCCCAGCCGCCCCTGGAGCTGATTCGCCTCTGGATTGACTACGGCTTCTGGTACGATCGTGTGAAGCAGAGCATCAAGCACATCCGAGACATGTTCCTGATGGCTGCCATGGGCCCTCCTGGGGGTGGACGGACTGTTATCTCCCCAAGGCTGCAGAGTCGCTTCAACATTATCAACATGACCTTCCCCACGGAATCCCAGATCATCCGCATATTTGGCACCATGATCAACCAGAAGCTCCAGGACTTTGAAGAAGAGGTGAAGCCCATTGGGAATGTGGTAACAGAGGCCACCCTGGACGTTTACAATACGGTGGTACAGCGCTTCCTGCCCACCCCGGCGAAGATCCATTACCTCTTCAACCTCCGGGACATCTCCAAGGTCTTCCAGGGCATGCTTAGAGCCAACAAGGACTTTCATGATACCAAAGCCAGCATCACAAGACTCTGGATTCATGAGTGTTTCAGAGTCTTCTCTGACAGACTGGTCGATACAGCAGACATGGAAGCCTTTATGGGCATCTTAAGTGACAAACTCGGTACCTTCTTTGACCTCACGTTTCATCATCTCTGTCCCAACAAACGCCCTCCCATCTTTGGGGACTTCCTGAAGGAGCCCAAGGTCTATGAAGACCTGGTAGACCTGACAGTATTGAAGACAGCCATGGAGACGGCCCTGAATGAGTACAATCTGTCTCCTTCGGTTGTGCCAATGCAGCTGGTGCTCTTCCGAGAGGCCATTGAACACATCACTCGGATCGTGCGTGTGATCGGACAGCCCCGAGGCAACATGTTGCTGGTGGGGATCGGGGGCAGCGGGAGGCAGAGTCTGGCCCGCTTGGCGTCTTCCATCTGCGATTATAACACGTTCCAGATCGAGGTCACCAAGCACTACCGCAAACAGGAGTTCCGAGACGATATCAAGCGCTTGTATCGACAGGCAGGGGTAGAACTCCAGACCACGTCTTTCCTTTTCGTGGACACCCAGATAGCTGACGAATCCTTCCTGGAAGACATCAACAACATCCTTAGCTCGGGCGAAGTCCCCAATCTCTACAAGTCTGACGAATTTGAAGAGATCCAGAACCATATCATAGACCAGGCCCGGGCAGAACAGATACCAGAATCCTCGGACAGCCTCTTTGCATACCTCATCGAGCGCGTGCGGAACAACCTGCACATTGTGCTCTGTCTAAGTCCCGTGGGAGACCCCTTCAGGAATTGGATTCGCCAGTACCCAGCCTTAGTAAACTGTACAACCATCAACTGGTTCTCAGAGTGGCCCCGAGAGGCCTTGCTAGAGGTGGCTGAGAAGTACATTATAGGAGTGGACTTGGGGACACAGGAGAATATCCACAGGAAAGTGGCCCAAATCTTTGTCACCATGCACTGGTCAGTGGCTCAGTATTCCCAGAAGATGCTGTTGGAACTGCGGAGATACAACTATGTCACACCCACAAACTACCTGGAGCTCGTGTCTGGATATAAAAAGCTTCTGGGAGAAAAGCGGCAGGAGCTGCTGGACCAAGCCAATAAGCTTCGAACTGGATTGTTTAAGATTGACGAAACTAGGGAGAAAGTCGAAGTGATGTCCTTGGAGCTGGAGGACGCCAAGAAAAAAGTGGCAGAGTTCCAGAAGCAGTGCGAAGAATACCTGGTCATCATTGTGCAGCAGAAGCGGGAAGCAGATGAGCAGCAGAAGGCCGTCACTGCCAATAGTGAGAAGATCGCTATTGAGGAGGTCAAGTGCCAGGCGCTGGCCGACAATGCCCAGAAGGATCTAGAGGAAGCATTGCCCGCCCTTGAAGAAGCCATGCGGGCCCTAGAGTCTCTGAACAAGAAGGACATAGGTGAGATCAAGTCCTACGGACGACCCCCTGCGCAGGTGGAAATTGTAATGCAGGCAGTCATGATTCTTCGAGGCAATGAGCCCACGTGGGCAGAAGCAAAGCGACAGTTAGGGGAGCAGAACTTCATCAAGTCATTGATCAACTTTGATAAAGACAACATCTCAGATAAGGTATTGAAGAAGATCGGGGCCTACTGCGCCCAGCCCGACTTCCAGCCTGATATCATTGGCAGAGTCTCCCTGGCTGCTAAGTCCCTCTGCATGTGGGTGCGGGCCATGGAGTTGTACGGGCGTCTGTATCGAGTGGTAGAGCCTAAGCGGATCCGAATGAACGCCGCCATGGCCCAGCTTCAGGAGAAGCAAGCAGCCCTAGCTGAAGCCCAGGAAAAGCTGCGAGAGGTGGCAGAGAAATTGGAGATGCTGAAGAAACAGTATGATGAGAAGCTGGCACAGAAGGAGGAGCTTCGAAAGAAATCGGAGGAGATGGAGCTGAAGCTGGAGCGAGCAGGAATGTTGGTGTCTGGGCTAGCTGGTGAAAAGGCACGATGGGAAGAGACTGTGCAGGGCCTGGAGGAGGATCTGGGTTACCTGGTGGGCGACTGTCTGATTGCAGCTGCGTTCTTGTCCTACATGGGACCCTTTCTGACCAATTACCGGGATGAGATTATCAATCAAATCTGGATCAGGAAGATCAGGGAGCTTCAGGTTCCCTGTTCACCTCGCTTTGCCATTGATAACTTCCTGACCAATCCCACCAAAGTCCGGGACTGGAACATCCAGGGGTTGCCCTCAGATGCCTTCTCCACAGAGAATGGCATCATCGTCACCAGGGGCAACAGGTGGGCCCTCATGATCGATCCTCAGGGCCAAGCCCTCAAGTGGATTAAGAACATGGAAGGAAACCAGGGCCTTAAAATCATCGACCTGCAGATGCATGACTACCTTCGAGTTCTAGAACATGCCATCCAGTTTGGATTTCCAGTGCTACTCCAGAATGTGCAGGAGTATCTGGACCCCACGCTCAACCCAGTGCTCAACAAATCTGTAGCTCGAATTGGTGGTCGGATGCTGATTCGAATTGGTGACAAGGAGGTGGAATACAATCCCAATTTCCGTTTCTACCTCACCACCAAGCTCTCCAATCCCCACTATAATCCAGAGACTTCGGCTAAGACCACCATTGTCAACTTCGCTGTAAAGGAGCAGGGCCTGGAAGCCCAGCTGCTGGGCATTGTGGTTCGGAAGGAGCGACCAGAGCTGGAGGAGCAGAAGGACTCTCTGGTCATCAACATCGCTGCAGGAAAGAGAAAGCTCAAAGAACTAGAGGATGAGATCCTGCGCTTGTTGAATGAGGCCACAGGCTCTCTGCTTGATGACGTGCAGCTGGTGAATACCCTCCAGACATCCAAGATAACGGCCACCGAGGTGACCGAGCAACTGGAGACCAGTGAGACCACAGAGATCAACATTGACTTGGCCCGAGAGGCTTACCGTCCGTGTGCCCAGCGGGCCTCGGTGCTGTTCTTTGTGCTCAATGACATGGGCCGCATTGACCCCATGTACCAGTTCTCCCTGGACGCCTACATCGGCCTCTTTATCCTCAGCATTGACAAGAGCCACCGCAGCAATAAGCTGGAGGACCGCATCGAGTACCTGAATGACTACCACACCTATGCTGTCTACAGGTACACCTGCCGAACCCTTTTTGAGCGCCACAAGCTTCTGTTCAGTTTTCACATGTGCGCCAAAATCCTGGAGACGTCCGGCAAGCTCAACATGGATGAGTACAACTTCTTCCTGCGTGGGGGTGTGGTCCTGGATCGTGAAGGCCAAATGGACAATCCATGTACCAGTTGGCTGGCAGATGCCTACTGGGATAATATCACAGAACTGGACAAACTGACCAACTTCCATGGGCTCATGAACTCCTTTGAGCAGTACCCTCGGGACTGGCACCTGTGGTACACCAACTCTTCCCCGGAGAAGGCCATGCTGCCAGGTGAGTGGGAGAATGCGTGCAATGAGATGCAGCGGATGCTGATCGTCCGCTCCCTGCGTCAGGACCGAGTGGCATTCTGTGTTACTTCCTTCATCGTGTCCAACCTTGGCTCTCGATTCATTGAACCGCCTGTGCTAAACATGAAATCGGTGATGGAGGACTCTACCCCGAGATCCCCACTGGTATTCATCCTGTCCCCCGGTGTAGACCCCACCAGCGCTCTGCTTCAGCTGGCGGAGCACACAGGCATGGCCCACCGCTTCCATGCCCTGTCCCTGGGCCAGGGCCAGGCCCCCATTGCTGCTCGGCTTCTTCGAGAGGGTGTGAATCAAGGGCACTGGGTGTTCCTGGCAAACTGCCACCTGTCTCTGTCTTGGATGCCTAATCTGGACAAGTTGGTGGAGCAACTGCAGGTGGAGGACCCTCACCCTTCCTTCCGCCTGTGGCTCAGCTCTAGCCCCCACCCAGACTTCCCAATCTCCATCCTGCAGGCCAGCATCAAGATGACCACAGAGCCACCAAAGGTGAACCCAGCCGATGCCGAGAACTACTCCTTTATGGTGGAGATGACCTTTGTGTTCAGCATGATCTGGTCTGTGTGTGCCTCTGTGGACGAGGACGGACGCAAGAAGATTGACAGCTACCTTCGAGAAATCGAGGGCTCCTTTCCCAATAAGGACACAGTGTATGAATACTACGTGAACCCCAAGATGCGGACTTGGACGTCATTTGAGGAGAAGCTCCCCAAGAGCTGGCGTTATCCTCCCAACGCCCCTTTCTATAAGATCATGGTACCTACTGTTGATACTGTGCGGTATAACTACTTAGTGAGCACCCTGGTGGCCAACCAGAATCCTGTCTTACTGGTGGGTCCTGTGGGAACTGGAAAGACCTCCATAGCCCAGAGTGTTCTCCAGTCCTTGCCCTCCAGCCAGTGGTCAGTGCTCGTCGTCAACATGTCCGCACAGACCACGTCAAACAATGTGCAGAGCATCATTGAGAGCAGAGTAGAGAAGCGGACCAAGGGTGTGTATGTGCCATTCGGGGGCAAAAGCATGATTACTTTTATGGATGACCTAAACATGCCTGCCAAGGACATGTTTGGGTCCCAGCCGCCCCTGGAGCTGATTCGCCTCTGGATTGACTACGGCTTCTGGTACGATCGTGTGAAGCAGAGCATCAAGCACATCCGAGACATGTTCCTGATGGCTGCCATGGGCCCTCCTGGGGGTGGACGGACTGTTATCTCCCCAAGGCTGCAGAGTCGCTTCAACATTATCAACATGACCTTCCCCACGGAATCCCAGATCATCCGCATATTTGGCACCATGATCAACCAGAAGCTCCAGGACTTTGAAGAAGAGGTGAAGCCCATTGGGAATGTGGTAACAGAGGCCACCCTGGACGTTTACAATACGGTGGTACAGCGCTTCCTGCCCACCCCGGCGAAGATCCATTACCTCTTCAACCTCCGGGACATCTCCAAGGTCTTCCAGGGCATGCTTAGAGCCAACAAGGACTTTCATGATACCAAAGCCAGCATCACAAGACTCTGGATTCATGAGTGTTTCAGAGTCTTCTCTGACAGACTGGTCGATACAGCAGACATGGAAGCCTTTATGGGCATCTTAAGTGACAAACTCGGTACCTTCTTTGACCTCACGTTTCATCATCTCTGTCCCAACAAACGCCCTCCCATCTTTGGGGACTTCCTGAAGGAGCCCAAGGTCTATGAAGACCTGGTAGACCTGACAGTATTGAAGACAGCCATGGAGACGGCCCTGAATGAGTACAATCTGTCTCCTTCGGTTGTGCCAATGCAGCTGGTGCTCTTCCGAGAGGCCATTGAACACATCACTCGGATCGTGCGTGTGATCGGACAGCCCCGAGGCAACATGTTGCTGGTGGGGATCGGGGGCAGCGGGAGGCAGAGTCTGGCCCGCTTGGCGTCTTCCATCTGCGATTATAACACGTTCCAGATCGAGGTCACCAAGCACTACCGCAAACAGGAGTTCCGAGACGATATCAAGCGCTTGTATCGACAGGCAGGGGTAGAACTCCAGACCACGTCTTTCCTTTTCGTGGACACCCAGATAGCTGACGAATCCTTCCTGGAAGACATCAACAACATCCTTAGCTCGGGCGAAGTCCCCAATCTCTACAAGTCTGACGAATTTGAAGAGATCCAGAACCATATCATAGACCAGGCCCGGGCAGAACAGATACCAGAATCCTCGGACAGCCTCTTTGCATACCTCATCGAGCGCGTGCGGAACAACCTGCACATTGTGCTCTGTCTAAGTCCCGTGGGAGACCCCTTCAGGAATTGGATTCGCCAGTACCCAGCCTTAGTAAACTGTACAACCATCAACTGGTTCTCAGAGTGGCCCCGAGAGGCCTTGCTAGAGGTGGCTGAGAAGTACATTATAGGAGTGGACTTGGGGACACAGGAGAATATCCACAGGAAAGTGGCCCAAATCTTTGTCACCATGCACTGGTCAGTGGCTCAGTATTCCCAGAAGATGCTGTTGGAACTGCGGAGATACAACTATGTCACACCCACAAACTACCTGGAGCTCGTGTCTGGATATAAAAAGCTTCTGGGAGAAAAGCGGCAGGAGCTGCTGGACCAAGCCAATAAGCTTCGAACTGGATTGTTTAAGATTGACGAAACTAGGGAGAAAGTCGAAGTGATGTCCTTGGAGCTGGAGGACGCCAAGAAAAAAGTGGCAGAGTTCCAGAAGCAGTGCGAAGAATACCTGGTCATCATTGTGCAGCAGAAGCGGGAAGCAGATGAGCAGCAGAAGGCCGTCACTGCCAATAGTGAGAAGATCGCTATTGAGGAGGTCAAGTGCCAGGCGCTGGCCGACAATGCCCAGAAGGATCTAGAGGAAGCATTGCCCGCCCTTGAAGAAGCCATGCGGGCCCTAGAGTCTCTGAACAAGAAGGACATAGGTGAGATCAAGTCCTACGGACGACCCCCTGCGCAGGTGGAAATTGTAATGCAGGCAGTCATGATTCTTCGAGGCAATGAGCCCACGTGGGCAGAAGCAAAGCGACAGTTAGGGGAGCAGAACTTCATCAAGTCATTGATCAACTTTGATAAAGACAACATCTCAGATAAGGTATTGAAGAAGATCGGGGCCTACTGCGCCCAGCCCGACTTCCAGCCTGATATCATTGGCAGAGTCTCCCTGGCTGCTAAGTCCCTCTGCATGTGGGTGCGGGCCATGGAGTTGTACGGGCGTCTGTATCGAGTGGTAGAGCCTAAGCGGATCCGAATGAACGCCGCCATGGCCCAGCTTCAGGAGAAGCAAGCAGCCCTAGCTGAAGCCCAGGAAAAGCTGCGAGAGGTGGCAGAGAAATTGGAGATGCTGAAGAAACAGTATGATGAGAAGCTGGCACAGAAGGAGGAGCTTCGAAAGAAATCGGAGGAGATGGAGCTGAAGCTGGAGCGAGCAGGAATGTTGGTGTCTGGGCTAGCTGGTGAAAAGGCACGATGGGAAGAGACTGTGCAGGGCCTGGAGGAGGATCTGGGTTACCTGGTGGGCGACTGTCTGATTGCAGCTGCGTTCTTGTCCTACATGGGACCCTTTCTGACCAATTACCGGGATGAGATTATCAATCAAATCTGGATCAGGAAGATCAGGGAGCTTCAGGTTCCCTGTTCACCTCGCTTTGCCATTGATAACTTCCTGACCAATCCCACCAAAGTCCGGGACTGGAACATCCAGGGGTTGCCCTCAGATGCCTTCTCCACAGAGAATGGCATCATCGTCACCAGGGGCAACAGGTGGGCCCTCATGATCGATCCTCAGGGCCAAGCCCTCAAGTGGATTAAGAACATGGAAGGAAACCAGGGCCTTAAAATCATCGACCTGCAGATGCATGACTACCTTCGAGTTCTAGAACATGCCATCCAGTTTGGATTTCCAGTGCTACTCCAGAATGTGCAGGAGTATCTGGACCCCACGCTCAACCCAGTGCTCAACAAATCTGTAGCTCGAATTGGTGGTCGGATGCTGATTCGAATTGGTGACAAGGAGGTGGAATACAATCCCAATTTCCGTTTCTACCTCACCACCAAGCTCTCCAATCCCCACTATAATCCAGAGACTTCGGCTAAGACCACCATTGTCAACTTCGCTGTAAAGGAGCAGGGCCTGGAAGCCCAGCTGCTGGGCATTGTGGTTCGGAAGGAGCGACCAGAGCTGGAGGAGCAGAAGGACTCTCTGGTCATCAACATCGCTGCAGGAAAGAGAAAGCTCAAAGAACTAGAGGATGAGATCCTGCGCTTGTTGAATGAGGCCACAGGCTCTCTGCTTGATGACGTGCAGCTGGTGAATACCCTCCAGACATCCAAGATAACGGCCACCGAGGTGACCGAGCAACTGGAGACCAGTGAGACCACAGAGATCAACATTGACTTGGCCCGAGAGGCTTACCGTCCGTGTGCCCAGCGGGCCTCGGTGCTGTTCTTTGTGCTCAATGACATGGGCCGCATTGACCCCATGTACCAGTTCTCCCTGGACGCCTACATCGGCCTCTTTATCCTCAGCATTGACAAGAGCCACCGCAGCAATAAGCTGGAGGACCGCATCGAGTACCTGAATGACTACCACACCTATGCTGTCTACAGGTACACCTGCCGAACCCTTTTTGAGCGCCACAAGCTTCTGTTCAGTTTTCACATGTGCGCCAAAATCCTGGAGACGTCCGGCAAGCTCAACATGGATGAGTACAACTTCTTCCTGCGTGGGGGTGTGGTCCTGGATCGTGAAGGCCAAATGGACAATCCATGTACCAGTTGGCTGGCAGATGCCTACTGGGATAATATCACAGAACTGGACAAACTGACCAACTTCCATGGGCTCATGAACTCCTTTGAGCAGTACCCTCGGGACTGGCACCTGTGGTACACCAACTCTTCCCCGGAGAAGGCCATGCTGCCAGGTGAGTGGGAGAATGCGTGCAATGAGATGCAGCGGATGCTGATCGTCCGCTCCCTGCGTCAGGACCGAGTGGCATTCTGTGTTACTTCCTTCATCGTGTCCAACCTTGGCTCTCGATTCATTGAACCGCCTGTGCTAAACATGAAATCGGTGATGGAGGACTCTACCCCGAGATCCCCACTGGTATTCATCCTGTCCCCCGGTGTAGACCCCACCAGCGCTCTGCTTCAGCTGGCGGAGCACACAGGCATGGCCCACCGCTTCCATGCCCTGTCCCTGGGCCAGGGCCAGGCCCCCATTGCTGCTCGGCTTCTTCGAGAGGGTGTGAATCAAGGGCACTGGGTGTTCCTGGCAAACTGCCACCTGTCTCTGTCTTGGATGCCTAATCTGGACAAGTTGGTGGAGCAACTGCAGGTGGAGGACCCTCACCCTTCCTTCCGCCTGTGGCTCAGCTCTAGCCCCCACCCAGACTTCCCAATCTCCATCCTGCAGGCCAGCATCAAGATGACCACAGAGCCACCAAAG
Peptide sequence:
MVEMTFVFSMIWSVCASVDEDGRKKIDSYLREIEGSFPNKDTVYEYYVNPKMRTWTSFEEKLPKSWRYPPNAPFYKIMVPTVDTVRYNYLVSTLVANQNPVLLVGPVGTGKTSIAQSVLQSLPSSQWSVLVVNMSAQTTSNNVQSIIESRVEKRTKGVYVPFGGKSMITFMDDLNMPAKDMFGSQPPLELIRLWIDYGFWYDRVKQSIKHIRDMFLMAAMGPPGGGRTVISPRLQSRFNIINMTFPTESQIIRIFGTMINQKLQDFEEEVKPIGNVVTEATLDVYNTVVQRFLPTPAKIHYLFNLRDISKVFQGMLRANKDFHDTKASITRLWIHECFRVFSDRLVDTADMEAFMGILSDKLGTFFDLTFHHLCPNKRPPIFGDFLKEPKVYEDLVDLTVLKTAMETALNEYNLSPSVVPMQLVLFREAIEHITRIVRVIGQPRGNMLLVGIGGSGRQSLARLASSICDYNTFQIEVTKHYRKQEFRDDIKRLYRQAGVELQTTSFLFVDTQIADESFLEDINNILSSGEVPNLYKSDEFEEIQNHIIDQARAEQIPESSDSLFAYLIERVRNNLHIVLCLSPVGDPFRNWIRQYPALVNCTTINWFSEWPREALLEVAEKYIIGVDLGTQENIHRKVAQIFVTMHWSVAQYSQKMLLELRRYNYVTPTNYLELVSGYKKLLGEKRQELLDQANKLRTGLFKIDETREKVEVMSLELEDAKKKVAEFQKQCEEYLVIIVQQKREADEQQKAVTANSEKIAIEEVKCQALADNAQKDLEEALPALEEAMRALESLNKKDIGEIKSYGRPPAQVEIVMQAVMILRGNEPTWAEAKRQLGEQNFIKSLINFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVEPKRIRMNAAMAQLQEKQAALAEAQEKLREVAEKLEMLKKQYDEKLAQKEELRKKSEEMELKLERAGMLVSGLAGEKARWEETVQGLEEDLGYLVGDCLIAAAFLSYMGPFLTNYRDEIINQIWIRKIRELQVPCSPRFAIDNFLTNPTKVRDWNIQGLPSDAFSTENGIIVTRGNRWALMIDPQGQALKWIKNMEGNQGLKIIDLQMHDYLRVLEHAIQFGFPVLLQNVQEYLDPTLNPVLNKSVARIGGRMLIRIGDKEVEYNPNFRFYLTTKLSNPHYNPETSAKTTIVNFAVKEQGLEAQLLGIVVRKERPELEEQKDSLVINIAAGKRKLKELEDEILRLLNEATGSLLDDVQLVNTLQTSKITATEVTEQLETSETTEINIDLAREAYRPCAQRASVLFFVLNDMGRIDPMYQFSLDAYIGLFILSIDKSHRSNKLEDRIEYLNDYHTYAVYRYTCRTLFERHKLLFSFHMCAKILETSGKLNMDEYNFFLRGGVVLDREGQMDNPCTSWLADAYWDNITELDKLTNFHGLMNSFEQYPRDWHLWYTNSSPEKAMLPGEWENACNEMQRMLIVRSLRQDRVAFCVTSFIVSNLGSRFIEPPVLNMKSVMEDSTPRSPLVFILSPGVDPTSALLQLAEHTGMAHRFHALSLGQGQAPIAARLLREGVNQGHWVFLANCHLSLSWMPNLDKLVEQLQVEDPHPSFRLWLSSSPHPDFPISILQASIKMTTEPPKVNPADAENYSFMVEMTFVFSMIWSVCASVDEDGRKKIDSYLREIEGSFPNKDTVYEYYVNPKMRTWTSFEEKLPKSWRYPPNAPFYKIMVPTVDTVRYNYLVSTLVANQNPVLLVGPVGTGKTSIAQSVLQSLPSSQWSVLVVNMSAQTTSNNVQSIIESRVEKRTKGVYVPFGGKSMITFMDDLNMPAKDMFGSQPPLELIRLWIDYGFWYDRVKQSIKHIRDMFLMAAMGPPGGGRTVISPRLQSRFNIINMTFPTESQIIRIFGTMINQKLQDFEEEVKPIGNVVTEATLDVYNTVVQRFLPTPAKIHYLFNLRDISKVFQGMLRANKDFHDTKASITRLWIHECFRVFSDRLVDTADMEAFMGILSDKLGTFFDLTFHHLCPNKRPPIFGDFLKEPKVYEDLVDLTVLKTAMETALNEYNLSPSVVPMQLVLFREAIEHITRIVRVIGQPRGNMLLVGIGGSGRQSLARLASSICDYNTFQIEVTKHYRKQEFRDDIKRLYRQAGVELQTTSFLFVDTQIADESFLEDINNILSSGEVPNLYKSDEFEEIQNHIIDQARAEQIPESSDSLFAYLIERVRNNLHIVLCLSPVGDPFRNWIRQYPALVNCTTINWFSEWPREALLEVAEKYIIGVDLGTQENIHRKVAQIFVTMHWSVAQYSQKMLLELRRYNYVTPTNYLELVSGYKKLLGEKRQELLDQANKLRTGLFKIDETREKVEVMSLELEDAKKKVAEFQKQCEEYLVIIVQQKREADEQQKAVTANSEKIAIEEVKCQALADNAQKDLEEALPALEEAMRALESLNKKDIGEIKSYGRPPAQVEIVMQAVMILRGNEPTWAEAKRQLGEQNFIKSLINFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVEPKRIRMNAAMAQLQEKQAALAEAQEKLREVAEKLEMLKKQYDEKLAQKEELRKKSEEMELKLERAGMLVSGLAGEKARWEETVQGLEEDLGYLVGDCLIAAAFLSYMGPFLTNYRDEIINQIWIRKIRELQVPCSPRFAIDNFLTNPTKVRDWNIQGLPSDAFSTENGIIVTRGNRWALMIDPQGQALKWIKNMEGNQGLKIIDLQMHDYLRVLEHAIQFGFPVLLQNVQEYLDPTLNPVLNKSVARIGGRMLIRIGDKEVEYNPNFRFYLTTKLSNPHYNPETSAKTTIVNFAVKEQGLEAQLLGIVVRKERPELEEQKDSLVINIAAGKRKLKELEDEILRLLNEATGSLLDDVQLVNTLQTSKITATEVTEQLETSETTEINIDLAREAYRPCAQRASVLFFVLNDMGRIDPMYQFSLDAYIGLFILSIDKSHRSNKLEDRIEYLNDYHTYAVYRYTCRTLFERHKLLFSFHMCAKILETSGKLNMDEYNFFLRGGVVLDREGQMDNPCTSWLADAYWDNITELDKLTNFHGLMNSFEQYPRDWHLWYTNSSPEKAMLPGEWENACNEMQRMLIVRSLRQDRVAFCVTSFIVSNLGSRFIEPPVLNMKSVMEDSTPRSPLVFILSPGVDPTSALLQLAEHTGMAHRFHALSLGQGQAPIAARLLREGVNQGHWVFLANCHLSLSWMPNLDKLVEQLQVEDPHPSFRLWLSSSPHPDFPISILQASIKMTTEPPK
IRESfinder result
IRESfinder score
0.432946273
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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