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mmu_circCorin_1180
Basic information of circular RNA
PanCircBase ID:
mmu_circCorin_1180
mm39_Chr. Position ID:
chr5|72473366|72500460|-
Gene name:
Corin
Transcript:
ENSMUST00000167460.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
19,18,17,16,15,14,13,12,11
Exon/intron offsets:
0,318,3498,13588,14787,16644,22937,23817,26862
Genomic length:
27094
Exon/intron sizes in nt:
1,75,50,11,41,30,11,11,00,00,00,00,000
Flanking exon/introns:
chr5:72462489-72473366|chr5:72500460-72511212
Splice length:
1180
Other database IDs:
circAtlas: mmu-Corin_0005
circAtlas: hsa-CORIN_0012
Human Ortholog IDs:
Mature spliced Sequence:
GTCAATGTGAGCCCATCACTTTGGAACTCTGCATGAATTTGCCCTACAACCATACACATTATCCAAATTACCTTGGCCACAGAACTCAAAAGGAAGCGTCCATCAGCTGGGAGTCATCCCTTTTCCCTGCCCTTGTACAAACCAACTGTTACAAATACCTCATGTTTTTCGCTTGCACCATTTTGGTTCCAAAGTGTGATGTGAATACAGGACAACGCATCCCGCCTTGCAGACTCCTGTGTGAGCACTCCAAAGAGCGCTGTGAGTCTGTTCTGGGAATCGTTGGCCTGCAGTGGCCTGAAGACACCGACTGCAATCAATTTCCAGAGGAAAGTTCAGACAATCAAACTTGCCTCCTGCCCAATGAAGATGTGGAAGAATGCTCTCCGAGTCACTTCAAATGCCGCTCGGGACGATGCGTTCTGGGCTCCAGGAGATGTGACGGCCAGGCTGACTGTGACGACGACAGTGACGAGGAGAACTGTGGTTGTAAAGAGAGAGCTCTTTGGGAATGTCCATTTAATAAGCAATGTCTGAAGCATACATTAATCTGCGATGGGTTTCCAGATTGTCCAGACAGTATGGATGAAAAAAACTGCTCATTTTGCCAAGACAATGAGCTGGAATGTGCCAACCATGAGTGTGTGCCGCGTGACCTTTGGTGCGACGGATGGGTCGACTGCTCAGACAGTTCTGATGAATGGGGCTGTGTGACCCTCTCTAAAAATGGGAACTCCTCCTCATTGCTGACTGTTCACAAATCTGCAAAGGAACACCACGTGTGTGCTGACGGCTGGCGGGAGACGTTGAGTCAGCTGGCCTGCAAGCAGATGGGTTTAGGAGAACCGTCTGTGACCAAGCTGATCCCAGGACAGGAAGGCCAGCAGTGGCTGAGGTTGTACCCCAACTGGGAGAATCTCAATGGGAGCACCTTGCAGGAGCTGCTGGTATACAGGCACTCCTGCCCAAGCAGAAGTGAGATTTCCCTTCTGTGCTCCAAGCAAGACTGTGGCCGCCGCCCTGCTGCCCGAATGAACAAGAGGATCCTTGGGGGTCGGACTAGTCGTCCTGGGAGGTGGCCGTGGCAGTGCTCTCTGCAGAGTGAACCCAGTGGACATATCTGTGGCTGTGTCCTCATTGCCAAGAAGTGGGTCCTGACAGTTGCCCATTGCTTTGAAGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGCAGAGTGAACCCAGTG
59.61
TTGAGTTCTGTGGCCAAGGT
59.45
176
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCTGTGTCCTCATTGCCAAG
59.48
TTGAGTTCTGTGGCCAAGGT
59.45
144
PCR template sequence:
CGTGGCAGTGCTCTCTGCAGAGTGAACCCAGTGGACATATCTGTGGCTGTGTCCTCATTGCCAAGAAGTGGGTCCTGACAGTTGCCCATTGCTTTGAAGGGTCAATGTGAGCCCATCACTTTGGAACTCTGCATGAATTTGCCCTACAACCATACACATTATCCAAATTACCTTGGCCACAGAACTCAAAAGGAAGCGTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-429-3p(1), mmu-miR-375-3p(1), mmu-miR-18a-5p(1), mmu-miR-132-3p(1), mmu-miR-96-5p(1), mmu-miR-212-3p(1), mmu-miR-182-5p(1), mmu-miR-384-3p(1), mmu-miR-342-3p(1), mmu-miR-190b-5p(1), mmu-miR-673-5p(1), mmu-miR-335-3p(1), mmu-miR-3470b(1)
siRNAs for circular RNA silencing
Junction sequence
ATTGCTTTGAAGGGTCAATGTGAGCC
siRNA sets
ACATTGACCCTTCAAAGCA,ATTGACCCTTCAAAGCAAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCORIN_1180_ORF_1
0.7121
0.122045124
0.9924712
1158
ORF sequence:
ATGAATTTGCCCTACAACCATACACATTATCCAAATTACCTTGGCCACAGAACTCAAAAGGAAGCGTCCATCAGCTGGGAGTCATCCCTTTTCCCTGCCCTTGTACAAACCAACTGTTACAAATACCTCATGTTTTTCGCTTGCACCATTTTGGTTCCAAAGTGTGATGTGAATACAGGACAACGCATCCCGCCTTGCAGACTCCTGTGTGAGCACTCCAAAGAGCGCTGTGAGTCTGTTCTGGGAATCGTTGGCCTGCAGTGGCCTGAAGACACCGACTGCAATCAATTTCCAGAGGAAAGTTCAGACAATCAAACTTGCCTCCTGCCCAATGAAGATGTGGAAGAATGCTCTCCGAGTCACTTCAAATGCCGCTCGGGACGATGCGTTCTGGGCTCCAGGAGATGTGACGGCCAGGCTGACTGTGACGACGACAGTGACGAGGAGAACTGTGGTTGTAAAGAGAGAGCTCTTTGGGAATGTCCATTTAATAAGCAATGTCTGAAGCATACATTAATCTGCGATGGGTTTCCAGATTGTCCAGACAGTATGGATGAAAAAAACTGCTCATTTTGCCAAGACAATGAGCTGGAATGTGCCAACCATGAGTGTGTGCCGCGTGACCTTTGGTGCGACGGATGGGTCGACTGCTCAGACAGTTCTGATGAATGGGGCTGTGTGACCCTCTCTAAAAATGGGAACTCCTCCTCATTGCTGACTGTTCACAAATCTGCAAAGGAACACCACGTGTGTGCTGACGGCTGGCGGGAGACGTTGAGTCAGCTGGCCTGCAAGCAGATGGGTTTAGGAGAACCGTCTGTGACCAAGCTGATCCCAGGACAGGAAGGCCAGCAGTGGCTGAGGTTGTACCCCAACTGGGAGAATCTCAATGGGAGCACCTTGCAGGAGCTGCTGGTATACAGGCACTCCTGCCCAAGCAGAAGTGAGATTTCCCTTCTGTGCTCCAAGCAAGACTGTGGCCGCCGCCCTGCTGCCCGAATGAACAAGAGGATCCTTGGGGGTCGGACTAGTCGTCCTGGGAGGTGGCCGTGGCAGTGCTCTCTGCAGAGTGAACCCAGTGGACATATCTGTGGCTGTGTCCTCATTGCCAAGAAGTGGGTCCTGACAGTTGCCCATTGCTTTGAAGGGTCAATGTGA
Peptide sequence:
MNLPYNHTHYPNYLGHRTQKEASISWESSLFPALVQTNCYKYLMFFACTILVPKCDVNTGQRIPPCRLLCEHSKERCESVLGIVGLQWPEDTDCNQFPEESSDNQTCLLPNEDVEECSPSHFKCRSGRCVLGSRRCDGQADCDDDSDEENCGCKERALWECPFNKQCLKHTLICDGFPDCPDSMDEKNCSFCQDNELECANHECVPRDLWCDGWVDCSDSSDEWGCVTLSKNGNSSSLLTVHKSAKEHHVCADGWRETLSQLACKQMGLGEPSVTKLIPGQEGQQWLRLYPNWENLNGSTLQELLVYRHSCPSRSEISLLCSKQDCGRRPAARMNKRILGGRTSRPGRWPWQCSLQSEPSGHICGCVLIAKKWVLTVAHCFEGSM
IRESfinder result
IRESfinder score
0.53264153
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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