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mmu_circCenpc1_1869
Basic information of circular RNA
PanCircBase ID:
mmu_circCenpc1_1869
mm39_Chr. Position ID:
chr5|86180247|86200100|-
Gene name:
Cenpc1
Transcript:
ENSMUST00000031170.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
12,11,10,9,8,7,6,5,4
Exon/intron offsets:
0,1176,1842,3027,4923,12903,13990,15195,19782
Genomic length:
19853
Exon/intron sizes in nt:
83,147,280,174,602,210,202,100,71
Flanking exon/introns:
chr5:86177049-86180247|chr5:86200100-86206013
Splice length:
1869
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
ATTTTACAGAGTCATTGACTTCTTCAACACAAAAAAAGAAAGCCAATTATAGTCAATCATCAAGCAAAAAGTGCCCAGAGTCACATTCCAAACCAGTTCCAGTGTCTTCAAGGACAGGAGAAGCTTCTCTGCAAGCGTCTGCAGAGCCCAGTGAAGCCGCTGGTGGATCAGTTCAGGCTAATGAAGTTCACCATGGTGCGTCTGATGAATTGGACTTATGTGTTGGCTCCCCTGTGGTTCTCCTGGATGCAAACGTCAACACGTTACAGAAAGCCGCTTCACCTGCCGGCCAAAAGAGAGTGGCTTCTGTCTCAAGGAGTCCAGTAGATAGGCAGGCTTCAAATAAAAACATTTCTTTTAAAACCAGGAAAAGGTTAAACTTTGAAGATAAAGTTACTTTGAGCACAGCAGAAACAGAGAACAGTGTGTTACAAGTAGAGGATAACTTATCCAAGGGACAAGAAGGGACATCATCAGAAATCACTCAGAAAAGAGACGATCTGAGTTCTGATGTCCAATCACGTTCTAAGAAGAATTTTTCGGAGTTGTTTTTAGAGACTGTCAAGAGGAAAAGTAAATCCAGTTCTGTGGTCAGGCACACAGCAGCAGTTCCATTTTCTCCGCCTCCTCCAAGTGACATGAAATTATTAGAAGATGAATTTATTATTGATCGGTCAGATAGAAGTTTTTCAAGTCGACTTTGGGTGATGATACCAAGCAAAGACAGGCATCTGAGCGCCCACAAGCCATCTCCTGAAAACACTGCACTGCTTCAAGGTAAGAAGTCAAGAGAGAAATCTCATAGTTTATCTGCAATGACGTTTGCAAGAAACACACAGTCTGATAAGGCTCACCCAATAGAGGAAGCTCAGCTCTCTGTTGAAGAAAACCCGGCAACTACTTGTACAGATGAGTTGGAAAATGATTGTCGATCTCCTGAAAATAAAATGCAATCTGAGACTGCCAAAACCCCACCCGCATGGGAAAGGACTACGAAACAGAGCCAGAGGAGAGTGTCTAAGCCTAAAGCAGCTGAAGAGCTCAGGAAGGGACAGAGTAGCTGGGAAAATAGCAATGTGTCAAACACTGGCCAAGACAAGCTACAGATCAACTCGAAAAGAAATATGAAGGACTGTGAAGAGGTGAGGAATGAGCCTAATCCCAAGAAACAGAAGCCAGCTCTTGAAAATAAGAAAAAAACCAATAGCACCCAAACCAATAAGGAAAAATCTGGAAAGAAATTTTTTTCTGGTGGGTCCAAGAACAAATTTGTTCCCAAAAAAGTAACTTTGACTTCCAGGAGAAGTTGTAGAATTTCTCAGCGTCCATCTGAGTGGTGGAGGGTAAAATCAGATGAAAGTTCTGTTGATAGAAATCCTTCAAAAGAAAATAACTCACCAGTGGTATATCCCAATAAAAAGAAGCAGACTAAGAGAAATCATGTATCTAAGAGGGCTGGGAAGAAACCTGGTTCATCAAAAAGACAGAAGACAGAGATGAGCCCAAGAGTACAGAAGTCTTTAAATGTAAAGGATTCTGGAGGAACTGTTAGTGGCCATGATGACACTTCTCGTTCCCAGAGGAAGCCATTGAAAATCATTGAGGCAGACCCAACTCAGAAGAGCCTTGCTATTTCTCGACCTAAAAGAGGCTGTAAGTATCGAAACAATGTTATGACATCACCGAATGTTCATTTAAAGTCTCATACTGAGGAATATACAAGCAAGACACAAATGGAGTCTGCTTCCAATTCAGAAATGTCTAAACGTTCAGTGTGGGAAGAAAGTGGACCTTCCAGGTTCAAGAATTATGAAATGCCAGGGAGCAGTAATTCTGAGATGGGTGATGAACAGGACCAGAAGAGTTTGC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCCAGGGAGCAGTAATTCTG
60.07
TGGAATGTGACTCTGGGCAC
59.96
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCCAGGGAGCAGTAATTCTGA
59.79
TGGAATGTGACTCTGGGCAC
59.96
143
PCR template sequence:
TCAGTGTGGGAAGAAAGTGGACCTTCCAGGTTCAAGAATTATGAAATGCCAGGGAGCAGTAATTCTGAGATGGGTGATGAACAGGACCAGAAGAGTTTGCATTTTACAGAGTCATTGACTTCTTCAACACAAAAAAAGAAAGCCAATTATAGTCAATCATCAAGCAAAAAGTGCCCAGAGTCACATTCCAAACCAGTTCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-29b-1-5p(2), mmu-miR-207(2), mmu-miR-199a-5p(1), mmu-miR-326-3p(1), mmu-miR-149-5p(1), mmu-miR-136-5p(1), mmu-miR-669d-5p(1), mmu-miR-452-3p(1), mmu-miR-188-3p(1), mmu-miR-490-3p(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
CAGAAGAGTTTGCATTTTACAGAGTC
siRNA sets
TCTGTAAAATGCAAACTCT, GTAAAATGCAAACTCTTCT, CTCTGTAAAATGCAAACTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCENPC1_1869_ORF_1
0.9248
0.040102142
0.999999994
3099
ORF sequence:
ATGAAATTATTAGAAGATGAATTTATTATTGATCGGTCAGATAGAAGTTTTTCAAGTCGACTTTGGGTGATGATACCAAGCAAAGACAGGCATCTGAGCGCCCACAAGCCATCTCCTGAAAACACTGCACTGCTTCAAGGTAAGAAGTCAAGAGAGAAATCTCATAGTTTATCTGCAATGACGTTTGCAAGAAACACACAGTCTGATAAGGCTCACCCAATAGAGGAAGCTCAGCTCTCTGTTGAAGAAAACCCGGCAACTACTTGTACAGATGAGTTGGAAAATGATTGTCGATCTCCTGAAAATAAAATGCAATCTGAGACTGCCAAAACCCCACCCGCATGGGAAAGGACTACGAAACAGAGCCAGAGGAGAGTGTCTAAGCCTAAAGCAGCTGAAGAGCTCAGGAAGGGACAGAGTAGCTGGGAAAATAGCAATGTGTCAAACACTGGCCAAGACAAGCTACAGATCAACTCGAAAAGAAATATGAAGGACTGTGAAGAGGTGAGGAATGAGCCTAATCCCAAGAAACAGAAGCCAGCTCTTGAAAATAAGAAAAAAACCAATAGCACCCAAACCAATAAGGAAAAATCTGGAAAGAAATTTTTTTCTGGTGGGTCCAAGAACAAATTTGTTCCCAAAAAAGTAACTTTGACTTCCAGGAGAAGTTGTAGAATTTCTCAGCGTCCATCTGAGTGGTGGAGGGTAAAATCAGATGAAAGTTCTGTTGATAGAAATCCTTCAAAAGAAAATAACTCACCAGTGGTATATCCCAATAAAAAGAAGCAGACTAAGAGAAATCATGTATCTAAGAGGGCTGGGAAGAAACCTGGTTCATCAAAAAGACAGAAGACAGAGATGAGCCCAAGAGTACAGAAGTCTTTAAATGTAAAGGATTCTGGAGGAACTGTTAGTGGCCATGATGACACTTCTCGTTCCCAGAGGAAGCCATTGAAAATCATTGAGGCAGACCCAACTCAGAAGAGCCTTGCTATTTCTCGACCTAAAAGAGGCTGTAAGTATCGAAACAATGTTATGACATCACCGAATGTTCATTTAAAGTCTCATACTGAGGAATATACAAGCAAGACACAAATGGAGTCTGCTTCCAATTCAGAAATGTCTAAACGTTCAGTGTGGGAAGAAAGTGGACCTTCCAGGTTCAAGAATTATGAAATGCCAGGGAGCAGTAATTCTGAGATGGGTGATGAACAGGACCAGAAGAGTTTGCATTTTACAGAGTCATTGACTTCTTCAACACAAAAAAAGAAAGCCAATTATAGTCAATCATCAAGCAAAAAGTGCCCAGAGTCACATTCCAAACCAGTTCCAGTGTCTTCAAGGACAGGAGAAGCTTCTCTGCAAGCGTCTGCAGAGCCCAGTGAAGCCGCTGGTGGATCAGTTCAGGCTAATGAAGTTCACCATGGTGCGTCTGATGAATTGGACTTATGTGTTGGCTCCCCTGTGGTTCTCCTGGATGCAAACGTCAACACGTTACAGAAAGCCGCTTCACCTGCCGGCCAAAAGAGAGTGGCTTCTGTCTCAAGGAGTCCAGTAGATAGGCAGGCTTCAAATAAAAACATTTCTTTTAAAACCAGGAAAAGGTTAAACTTTGAAGATAAAGTTACTTTGAGCACAGCAGAAACAGAGAACAGTGTGTTACAAGTAGAGGATAACTTATCCAAGGGACAAGAAGGGACATCATCAGAAATCACTCAGAAAAGAGACGATCTGAGTTCTGATGTCCAATCACGTTCTAAGAAGAATTTTTCGGAGTTGTTTTTAGAGACTGTCAAGAGGAAAAGTAAATCCAGTTCTGTGGTCAGGCACACAGCAGCAGTTCCATTTTCTCCGCCTCCTCCAAGTGACATGAAATTATTAGAAGATGAATTTATTATTGATCGGTCAGATAGAAGTTTTTCAAGTCGACTTTGGGTGATGATACCAAGCAAAGACAGGCATCTGAGCGCCCACAAGCCATCTCCTGAAAACACTGCACTGCTTCAAGGTAAGAAGTCAAGAGAGAAATCTCATAGTTTATCTGCAATGACGTTTGCAAGAAACACACAGTCTGATAAGGCTCACCCAATAGAGGAAGCTCAGCTCTCTGTTGAAGAAAACCCGGCAACTACTTGTACAGATGAGTTGGAAAATGATTGTCGATCTCCTGAAAATAAAATGCAATCTGAGACTGCCAAAACCCCACCCGCATGGGAAAGGACTACGAAACAGAGCCAGAGGAGAGTGTCTAAGCCTAAAGCAGCTGAAGAGCTCAGGAAGGGACAGAGTAGCTGGGAAAATAGCAATGTGTCAAACACTGGCCAAGACAAGCTACAGATCAACTCGAAAAGAAATATGAAGGACTGTGAAGAGGTGAGGAATGAGCCTAATCCCAAGAAACAGAAGCCAGCTCTTGAAAATAAGAAAAAAACCAATAGCACCCAAACCAATAAGGAAAAATCTGGAAAGAAATTTTTTTCTGGTGGGTCCAAGAACAAATTTGTTCCCAAAAAAGTAACTTTGACTTCCAGGAGAAGTTGTAGAATTTCTCAGCGTCCATCTGAGTGGTGGAGGGTAAAATCAGATGAAAGTTCTGTTGATAGAAATCCTTCAAAAGAAAATAACTCACCAGTGGTATATCCCAATAAAAAGAAGCAGACTAAGAGAAATCATGTATCTAAGAGGGCTGGGAAGAAACCTGGTTCATCAAAAAGACAGAAGACAGAGATGAGCCCAAGAGTACAGAAGTCTTTAAATGTAAAGGATTCTGGAGGAACTGTTAGTGGCCATGATGACACTTCTCGTTCCCAGAGGAAGCCATTGAAAATCATTGAGGCAGACCCAACTCAGAAGAGCCTTGCTATTTCTCGACCTAAAAGAGGCTGTAAGTATCGAAACAATGTTATGACATCACCGAATGTTCATTTAAAGTCTCATACTGAGGAATATACAAGCAAGACACAAATGGAGTCTGCTTCCAATTCAGAAATGTCTAAACGTTCAGTGTGGGAAGAAAGTGGACCTTCCAGGTTCAAGAATTATGAAATGCCAGGGAGCAGTAATTCTGAGATGGGTGATGAACAGGACCAGAAGAGTTTG
Peptide sequence:
MKLLEDEFIIDRSDRSFSSRLWVMIPSKDRHLSAHKPSPENTALLQGKKSREKSHSLSAMTFARNTQSDKAHPIEEAQLSVEENPATTCTDELENDCRSPENKMQSETAKTPPAWERTTKQSQRRVSKPKAAEELRKGQSSWENSNVSNTGQDKLQINSKRNMKDCEEVRNEPNPKKQKPALENKKKTNSTQTNKEKSGKKFFSGGSKNKFVPKKVTLTSRRSCRISQRPSEWWRVKSDESSVDRNPSKENNSPVVYPNKKKQTKRNHVSKRAGKKPGSSKRQKTEMSPRVQKSLNVKDSGGTVSGHDDTSRSQRKPLKIIEADPTQKSLAISRPKRGCKYRNNVMTSPNVHLKSHTEEYTSKTQMESASNSEMSKRSVWEESGPSRFKNYEMPGSSNSEMGDEQDQKSLHFTESLTSSTQKKKANYSQSSSKKCPESHSKPVPVSSRTGEASLQASAEPSEAAGGSVQANEVHHGASDELDLCVGSPVVLLDANVNTLQKAASPAGQKRVASVSRSPVDRQASNKNISFKTRKRLNFEDKVTLSTAETENSVLQVEDNLSKGQEGTSSEITQKRDDLSSDVQSRSKKNFSELFLETVKRKSKSSSVVRHTAAVPFSPPPPSDMKLLEDEFIIDRSDRSFSSRLWVMIPSKDRHLSAHKPSPENTALLQGKKSREKSHSLSAMTFARNTQSDKAHPIEEAQLSVEENPATTCTDELENDCRSPENKMQSETAKTPPAWERTTKQSQRRVSKPKAAEELRKGQSSWENSNVSNTGQDKLQINSKRNMKDCEEVRNEPNPKKQKPALENKKKTNSTQTNKEKSGKKFFSGGSKNKFVPKKVTLTSRRSCRISQRPSEWWRVKSDESSVDRNPSKENNSPVVYPNKKKQTKRNHVSKRAGKKPGSSKRQKTEMSPRVQKSLNVKDSGGTVSGHDDTSRSQRKPLKIIEADPTQKSLAISRPKRGCKYRNNVMTSPNVHLKSHTEEYTSKTQMESASNSEMSKRSVWEESGPSRFKNYEMPGSSNSEMGDEQDQKSL
IRESfinder result
IRESfinder score
0.600901421
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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