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mmu_circCd46_139
Basic information of circular RNA
PanCircBase ID:
mmu_circCd46_139
mm39_Chr. Position ID:
chr1|194744660|194750476|-
Gene name:
Cd46
Transcript:
ENSMUST00000162650.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
10,9,8
Exon/intron offsets:
0,2335,5774
Genomic length:
5816
Exon/intron sizes in nt:
61,36,42
Flanking exon/introns:
chr1:194724321-194744660|chr1:194750476-194757817
Splice length:
139
Other database IDs:
CIRCpedia: MMU_CIRCpedia_12746, circAtlas: mmu-Cd46_0004
Human Ortholog IDs:
Mature spliced Sequence:
GATATCCTAGTCCCCGTGAAGGAATATTTAGCCAAGAATTAGATGCATGGATTATTGCTTTGATTGTTATTACGTCAATTGTTGGAGTTTTTATACTTTGTCTCATTGTGCTCAGGTGTTTTGAGCACAGGAAGAAAAC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACGTCAATTGTTGGAGTTTTTAT
55.34
ATCCATGCATCTAATTCTTGGCT
58.26
120
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACGTCAATTGTTGGAGTTTTTAT
55.34
ATCCATGCATCTAATTCTTGGC
56.87
120
PCR template sequence:
TACGTCAATTGTTGGAGTTTTTATACTTTGTCTCATTGTGCTCAGGTGTTTTGAGCACAGGAAGAAAACGATATCCTAGTCCCCGTGAAGGAATATTTAGCCAAGAATTAGATGCATGGATTATTGCTTTGATTGTTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
ACAGGAAGAAAACGATATCCTAGTCC
siRNA sets
GATATCGTTTTCTTCCTGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.894149872
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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