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mmu_circBtbd7_305
Basic information of circular RNA
PanCircBase ID:
mmu_circBtbd7_305
mm39_Chr. Position ID:
chr12|102761431|102774319|-
Gene name:
Btbd7
Transcript:
ENSMUST00000223554.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
8,7
Exon/intron offsets:
0,12727
Genomic length:
12888
Exon/intron sizes in nt:
1,44,161
Flanking exon/introns:
chr12:102760194-102761431|chr12:102774319-102777378
Splice length:
305
Other database IDs:
circBase: mmu_circ_0003673, CIRCpedia: MMU_CIRCpedia_773, circAtlas: mmu-Btbd7_0012
circAtlas: hsa-BTBD7_0015, CIRCpedia: HSA_CIRCpedia_118142
Human Ortholog IDs:
Mature spliced Sequence:
AGCCAAACTTACTGAGTGGCACTGCACATAGTGTGAACAAAAGAGGTGTGAAGAGAAGAGACCTGGACATAGAAGAACTTAGAGAGATCCTTTCTTCTCTCTTGCCTTTTGTGCGGATTGAACACATCCTACCTATAAACAGTGAGGTCTTAAGTGATGCAATGAAAAGAGGCTTGATCAGCACGCCGCCATCAGACATGCTTCCTACAGCAGAGGGCGGGAAATCAAACGCCTGGCTGCGGCAGAAGAACGCTGGCATATATGTTCGTCCTCGGCTGTTTTCTCCCTATGTGGAGGAAGCAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGAAATCAAACGCCTGGCTG
60.11
CCAGGTCTCTTCTCTTCACACC
60.03
152
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGAGGGCGGGAAATCAAACG
60.68
CCAGGTCTCTTCTCTTCACACC
60.03
160
PCR template sequence:
TACAGCAGAGGGCGGGAAATCAAACGCCTGGCTGCGGCAGAAGAACGCTGGCATATATGTTCGTCCTCGGCTGTTTTCTCCCTATGTGGAGGAAGCAAAGAGCCAAACTTACTGAGTGGCACTGCACATAGTGTGAACAAAAGAGGTGTGAAGAGAAGAGACCTGGACATAGAAGAACTTAGAGAGATCCTTTCTTCTCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-335-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GGAGGAAGCAAAGAGCCAAACTTACT
siRNA sets
GTAAGTTTGGCTCTTTGCT, AGTAAGTTTGGCTCTTTGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBTBD7_305_ORF_1
0.5433
0.170040075
0.082833308
159
ORF sequence:
ATGAAAAGAGGCTTGATCAGCACGCCGCCATCAGACATGCTTCCTACAGCAGAGGGCGGGAAATCAAACGCCTGGCTGCGGCAGAAGAACGCTGGCATATATGTTCGTCCTCGGCTGTTTTCTCCCTATGTGGAGGAAGCAAAGAGCCAAACTTACTGA
Peptide sequence:
MKRGLISTPPSDMLPTAEGGKSNAWLRQKNAGIYVRPRLFSPYVEEAKSQTY
IRESfinder result
IRESfinder score
0.413305551
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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