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mmu_circBtbd1_461
Basic information of circular RNA
PanCircBase ID:
mmu_circBtbd1_461
mm39_Chr. Position ID:
chr7|81455489|81468099|-
Gene name:
Btbd1
Transcript:
ENSMUST00000026093.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
4,3,2
Exon/intron offsets:
0,10173,12453
Genomic length:
12610
Exon/intron sizes in nt:
19,81,06,157
Flanking exon/introns:
chr7:81450898-81455489|chr7:81468099-81478720
Splice length:
461
Other database IDs:
circBase: hsa_circ_0036587, circAtlas: hsa-BTBD1_0010, CIRCpedia: HSA_CIRCpedia_130989
Human Ortholog IDs:
Mature spliced Sequence:
ATTTTTGTATTCAGACGAAGTTCAAATTGGTCCAGAAACCGTTATGACCACTCTTTATACTGCTAAGAAATATGCAGTCCCTGCCTTGGAAGCACATTGCGTAGAATTTCTCACCAAACATCTTAGGGCAGATAATGCCTTTATGTTGCTTACTCAGGCGCGGTTGTTCGATGAGCCCCAGCTGGCTAGTCTTTGTCTGGACACCATAGACAAGAGCACAGTGGATGCAATCAGTGCGGAGGGGTTTACTGATATTGACATAGATACACTCTGTGCAGTTCTAGAAAGAGACACACTGAGTATCCGAGAAAGTCGACTTTTTGGAGCTATTGTACGTTGGGCAGAAGCAGAGTGTCAGAGACAACAACTGGCTGTGACATTTGGAAACAAACAGAAAGTTCTAGGAAAAGCACTTTCCTTAATCCGCTTCCCACTGATGACAATTGAGGAGTTTGCAGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATCCGCTTCCCACTGATGAC
59.82
GCAATGTGCTTCCAAGGCAG
60.39
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AATCCGCTTCCCACTGATGA
59.09
CAATGTGCTTCCAAGGCAGG
59.75
140
PCR template sequence:
CAACAACTGGCTGTGACATTTGGAAACAAACAGAAAGTTCTAGGAAAAGCACTTTCCTTAATCCGCTTCCCACTGATGACAATTGAGGAGTTTGCAGCAGATTTTTGTATTCAGACGAAGTTCAAATTGGTCCAGAAACCGTTATGACCACTCTTTATACTGCTAAGAAATATGCAGTCCCTGCCTTGGAAGCACATTGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-705(1), mmu-miR-384-3p(1), mmu-miR-539-5p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GAGTTTGCAGCAGATTTTTGTATTCA
siRNA sets
AATACAAAAATCTGCTGCA,AAAAATCTGCTGCAAACTC,GAATACAAAAATCTGCTGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBTBD1_461_ORF_1
1.0358
0.066465627
0.571727297
465
ORF sequence:
ATGACCACTCTTTATACTGCTAAGAAATATGCAGTCCCTGCCTTGGAAGCACATTGCGTAGAATTTCTCACCAAACATCTTAGGGCAGATAATGCCTTTATGTTGCTTACTCAGGCGCGGTTGTTCGATGAGCCCCAGCTGGCTAGTCTTTGTCTGGACACCATAGACAAGAGCACAGTGGATGCAATCAGTGCGGAGGGGTTTACTGATATTGACATAGATACACTCTGTGCAGTTCTAGAAAGAGACACACTGAGTATCCGAGAAAGTCGACTTTTTGGAGCTATTGTACGTTGGGCAGAAGCAGAGTGTCAGAGACAACAACTGGCTGTGACATTTGGAAACAAACAGAAAGTTCTAGGAAAAGCACTTTCCTTAATCCGCTTCCCACTGATGACAATTGAGGAGTTTGCAGCAGATTTTTGTATTCAGACGAAGTTCAAATTGGTCCAGAAACCGTTATGA
Peptide sequence:
MTTLYTAKKYAVPALEAHCVEFLTKHLRADNAFMLLTQARLFDEPQLASLCLDTIDKSTVDAISAEGFTDIDIDTLCAVLERDTLSIRESRLFGAIVRWAEAECQRQQLAVTFGNKQKVLGKALSLIRFPLMTIEEFAADFCIQTKFKLVQKPL
IRESfinder result
IRESfinder score
0.614251708
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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