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mmu_circBtbd16_880
Basic information of circular RNA
PanCircBase ID:
mmu_circBtbd16_880
mm39_Chr. Position ID:
chr7|130378816|130398832|+
Gene name:
Btbd16
Transcript:
ENSMUST00000048453.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
2,3,4,5,6,7,8,9
Exon/intron offsets:
0,2470,7174,8855,11673,13135,18222,19885
Genomic length:
20016
Exon/intron sizes in nt:
10,71,49,74,14,49,01,10,00,000
Flanking exon/introns:
chr7:130376100-130378816|chr7:130398832-130407550
Splice length:
880
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGCTCATCACTGTCCTGCTGTGTCATCTCCACTGTCATTCATGAAAATGTTGAATTCAGTAAGTGGATCCTTTCGCAAGAAGGCCGGTGACAGCAGGTCTAGAGAGTGCAGGACTCGGCTGGAGCGCAGGATTGTTGGTGCAACCAACCGATGGCGTTTTCCCCAAGACCATTTCTGCGGAGACCTGTTGGCACTCTCCCAGATGTGCAATGTTTTAAATGTAGATCTTGACGAAGCTCTGAAGAACCCAGACAGATTATGTATCTCAAAATTCCAGAAGCTTTTCTCCGAAAATATCATGAACAGTGGCACCCAAAGCGGGGAAGCAGACGTGATCCTTGAATGCCTCGGCTTCAAGTGGGAACTCCACCACCCTCAGATCTTTCAGTCTGGGACCTTGGCCAAGCTCTACCTGACAGCCTTGATACAGAACATGAAAAGCTCCCAGAGGGAGCTGGACAAGGTTCAGAAAGCTCATCCATCCGGGAAGATCAAAAAAAGGTCCCCTGTAAAGAAGATCATCATTTCCATGAGGATCAATGACCCGGCAGTCACCAGAGTTGCCTTCGCCCTGGCCCTGAAGAACCTCTACATGAAGGAGGTGGAAATGACCGTGGACAATGTGCTGGGCGTGCTGGCTTCTGCTCACATCCTCCAGTTCAACCGACTATTTCAAAAGTGTGTCAACATGATGATGAACAGACTCGCACCAAGCACCATCAAGAACTTCTACTTGGCCGGCTGTAAGTACGAAGAAGAGCAGCTCACCATGGCCTGTGAGAAGTGGCTGGCAATGAACCTGGTCCCTCTAGTGGGGACTCAGATCCACCTCCGACAGATCCCTGAACCTCTGCTGTACAAGGTGCTGAAGTCGCCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACTCAGATCCACCTCCGACA
59.96
GCCTTCTTGCGAAAGGATCC
59.26
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACTCAGATCCACCTCCGACA
59.96
GGCCTTCTTGCGAAAGGATC
59.26
148
PCR template sequence:
AGAAGTGGCTGGCAATGAACCTGGTCCCTCTAGTGGGGACTCAGATCCACCTCCGACAGATCCCTGAACCTCTGCTGTACAAGGTGCTGAAGTCGCCCAGGTGCTCATCACTGTCCTGCTGTGTCATCTCCACTGTCATTCATGAAAATGTTGAATTCAGTAAGTGGATCCTTTCGCAAGAAGGCCGGTGACAGCAGGTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-32-5p(1), mmu-miR-221-3p(1), mmu-miR-298-5p(1), mmu-miR-143-3p(1), mmu-miR-25-3p(1), mmu-miR-214-3p(1), mmu-miR-335-3p(1), mmu-miR-1199-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGAAGTCGCCCAGGTGCTCATCACTG
siRNA sets
AGTGATGAGCACCTGGGCG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBTBD16_880_ORF_1
1.1715
0.29971887
0.992084144
930
ORF sequence:
ATGAAAATGTTGAATTCAGTAAGTGGATCCTTTCGCAAGAAGGCCGGTGACAGCAGGTCTAGAGAGTGCAGGACTCGGCTGGAGCGCAGGATTGTTGGTGCAACCAACCGATGGCGTTTTCCCCAAGACCATTTCTGCGGAGACCTGTTGGCACTCTCCCAGATGTGCAATGTTTTAAATGTAGATCTTGACGAAGCTCTGAAGAACCCAGACAGATTATGTATCTCAAAATTCCAGAAGCTTTTCTCCGAAAATATCATGAACAGTGGCACCCAAAGCGGGGAAGCAGACGTGATCCTTGAATGCCTCGGCTTCAAGTGGGAACTCCACCACCCTCAGATCTTTCAGTCTGGGACCTTGGCCAAGCTCTACCTGACAGCCTTGATACAGAACATGAAAAGCTCCCAGAGGGAGCTGGACAAGGTTCAGAAAGCTCATCCATCCGGGAAGATCAAAAAAAGGTCCCCTGTAAAGAAGATCATCATTTCCATGAGGATCAATGACCCGGCAGTCACCAGAGTTGCCTTCGCCCTGGCCCTGAAGAACCTCTACATGAAGGAGGTGGAAATGACCGTGGACAATGTGCTGGGCGTGCTGGCTTCTGCTCACATCCTCCAGTTCAACCGACTATTTCAAAAGTGTGTCAACATGATGATGAACAGACTCGCACCAAGCACCATCAAGAACTTCTACTTGGCCGGCTGTAAGTACGAAGAAGAGCAGCTCACCATGGCCTGTGAGAAGTGGCTGGCAATGAACCTGGTCCCTCTAGTGGGGACTCAGATCCACCTCCGACAGATCCCTGAACCTCTGCTGTACAAGGTGCTGAAGTCGCCCAGGTGCTCATCACTGTCCTGCTGTGTCATCTCCACTGTCATTCATGAAAATGTTGAATTCAGTAAGTGGATCCTTTCGCAAGAAGGCCGGTGA
Peptide sequence:
MKMLNSVSGSFRKKAGDSRSRECRTRLERRIVGATNRWRFPQDHFCGDLLALSQMCNVLNVDLDEALKNPDRLCISKFQKLFSENIMNSGTQSGEADVILECLGFKWELHHPQIFQSGTLAKLYLTALIQNMKSSQRELDKVQKAHPSGKIKKRSPVKKIIISMRINDPAVTRVAFALALKNLYMKEVEMTVDNVLGVLASAHILQFNRLFQKCVNMMMNRLAPSTIKNFYLAGCKYEEEQLTMACEKWLAMNLVPLVGTQIHLRQIPEPLLYKVLKSPRCSSLSCCVISTVIHENVEFSKWILSQEGR
IRESfinder result
IRESfinder score
0.491361752
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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