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mmu_circBtbd10_533
Basic information of circular RNA
PanCircBase ID:
mmu_circBtbd10_533
mm39_Chr. Position ID:
chr7|112921886|112929164|-
Gene name:
Btbd10
Transcript:
ENSMUST00000117577.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
7,6,5,4
Exon/intron offsets:
0,3098,5659,7175
Genomic length:
7278
Exon/intron sizes in nt:
111,198,121,103
Flanking exon/introns:
chr7:112915946-112921886|chr7:112929164-112931816
Splice length:
533
Other database IDs:
circAtlas: mmu-Btbd10_0009
circAtlas: hsa-BTBD10_0009, CIRCpedia: HSA_CIRCpedia_128146
Human Ortholog IDs:
Mature spliced Sequence:
GATGTTTGGATCTGGCCGGGAACATAATTTCACACGTCCCAATGAGAAGGGAGAATATGAGGTGGCAGAGGGAATTGGTTCTACTGTGTTTCGAGCTATTTTGGATTACTATAAGACAGGAATCATCCGCTGTCCTGATGGCATATCGATTCCTGAACTGCGAGAAGCATGTGATTACCTTTGTATCTCTTTTGAATACAGTACAATTAAATGTAGAGATCTCAGTGCCCTTATGCATGAGTTATCAAATGATGGTGCTCGTAGACAATTTGAATTTTATCTGGAAGAAATGATCCTCCCTCTCATGGTAGCAAGCGCCCAGAGTGGGGAACGAGAGTGCCATATCGTAGTGCTTACAGATGATGATGTAGTTGATTGGGATGAGGAGTATCCACCACAGATGGGAGAAGAATATTCACAGATTATTTATAGCACAAAATTATATAGATTTTTCAAGTACATTGAAAACAGAGATGTGGCCAAATCAGTTTTGAAGGAGAGGGGTCTTAAGAAGATTAGATTGGGAATAGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACAGAGATGTGGCCAAATCAGT
59.96
AACCAATTCCCTCTGCCACC
60.25
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACAGAGATGTGGCCAAATCAGT
59.96
CAATTCCCTCTGCCACCTCA
59.67
143
PCR template sequence:
ACAAAATTATATAGATTTTTCAAGTACATTGAAAACAGAGATGTGGCCAAATCAGTTTTGAAGGAGAGGGGTCTTAAGAAGATTAGATTGGGAATAGAAGGATGTTTGGATCTGGCCGGGAACATAATTTCACACGTCCCAATGAGAAGGGAGAATATGAGGTGGCAGAGGGAATTGGTTCTACTGTGTTTCGAGCTATT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-204-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-196a-5p(1), mmu-miR-326-3p(1), mmu-miR-207(1)
siRNAs for circular RNA silencing
Junction sequence
TTGGGAATAGAAGGATGTTTGGATCT
siRNA sets
CAAACATCCTTCTATTCCC, CCAAACATCCTTCTATTCC, AACATCCTTCTATTCCCAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBTBD10_533_ORF_1
0.6748
0.041208472
0.89175446
825
ORF sequence:
ATGTTTGGATCTGGCCGGGAACATAATTTCACACGTCCCAATGAGAAGGGAGAATATGAGGTGGCAGAGGGAATTGGTTCTACTGTGTTTCGAGCTATTTTGGATTACTATAAGACAGGAATCATCCGCTGTCCTGATGGCATATCGATTCCTGAACTGCGAGAAGCATGTGATTACCTTTGTATCTCTTTTGAATACAGTACAATTAAATGTAGAGATCTCAGTGCCCTTATGCATGAGTTATCAAATGATGGTGCTCGTAGACAATTTGAATTTTATCTGGAAGAAATGATCCTCCCTCTCATGGTAGCAAGCGCCCAGAGTGGGGAACGAGAGTGCCATATCGTAGTGCTTACAGATGATGATGTAGTTGATTGGGATGAGGAGTATCCACCACAGATGGGAGAAGAATATTCACAGATTATTTATAGCACAAAATTATATAGATTTTTCAAGTACATTGAAAACAGAGATGTGGCCAAATCAGTTTTGAAGGAGAGGGGTCTTAAGAAGATTAGATTGGGAATAGAAGGATGTTTGGATCTGGCCGGGAACATAATTTCACACGTCCCAATGAGAAGGGAGAATATGAGGTGGCAGAGGGAATTGGTTCTACTGTGTTTCGAGCTATTTTGGATTACTATAAGACAGGAATCATCCGCTGTCCTGATGGCATATCGATTCCTGAACTGCGAGAAGCATGTGATTACCTTTGTATCTCTTTTGAATACAGTACAATTAAATGTAGAGATCTCAGTGCCCTTATGCATGAGTTATCAAATGATGGTGCTCGTAGACAATTTGAATTTTATCTGGAAGAAATGA
Peptide sequence:
MFGSGREHNFTRPNEKGEYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIPELREACDYLCISFEYSTIKCRDLSALMHELSNDGARRQFEFYLEEMILPLMVASAQSGERECHIVVLTDDDVVDWDEEYPPQMGEEYSQIIYSTKLYRFFKYIENRDVAKSVLKERGLKKIRLGIEGCLDLAGNIISHVPMRRENMRWQRELVLLCFELFWITIRQESSAVLMAYRFLNCEKHVITFVSLLNTVQLNVEISVPLCMSYQMMVLVDNLNFIWKK
IRESfinder result
IRESfinder score
0.703316477
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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