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mmu_circBtaf1_960
Basic information of circular RNA
PanCircBase ID:
mmu_circBtaf1_960
mm39_Chr. Position ID:
chr19|36946455|36959221|+
Gene name:
Btaf1
Transcript:
ENSMUST00000099494.4
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
12,13,14,15,16,17,18
Exon/intron offsets:
0,858,3842,9259,11521,11931,12591
Genomic length:
12766
Exon/intron sizes in nt:
14,11,25,12,11,05,15,00,00,000
Flanking exon/introns:
chr19:36944252-36946455|chr19:36959221-36960848
Splice length:
960
Other database IDs:
circAtlas: mmu-Btaf1_0062
circAtlas: hsa-BTAF1_0079, CIRCpedia: HSA_CIRCpedia_143443
Human Ortholog IDs:
Mature spliced Sequence:
GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGGTACCCTCCATTATAAATACCTTATGGGATTCTCTTCTGGAATTAGATGATCTAACAGCTTCAACAAATAGTATTATGACTCTCCTTTCATCCATGTTAACTTACCCTCAGGTCCAGCAATGCAGTATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAGAACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAAGGTTTGGATGGAGCTTTTGAGCAAGGCGTCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGCCTAATGATGCAGCCTTCTCACTTACCTATTGATTTAAATATGCTGCTGGAAGTAAAAGCTAGAGCCAAGGAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAAGTTGTTAGGAGCACTCTGTTGCTATATTTGTGATCCAAGTGTAAATATGGTAAACCAGGAAATTAAACCAGCGGATTCCCTTGGCCAGTTACTGCTCTTCTATTTGAATTCCAAATCTGCTTTACAGAGAATTAGTGTTGCGTTAGTAATCTGTGAGTGGGCTGCTTTACAAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTCCCTTGGCCAGTTACTGC
60.25
AAGGTCCTGGAGTCCTTCGA
59.89
163
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCTTGGCCAGTTACTGCTCT
59.67
AAGGTCCTGGAGTCCTTCGA
59.89
160
PCR template sequence:
TTCCCTTGGCCAGTTACTGCTCTTCTATTTGAATTCCAAATCTGCTTTACAGAGAATTAGTGTTGCGTTAGTAATCTGTGAGTGGGCTGCTTTACAAAAGGATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
12
Interacting miRNAs (#binding sites)
mmu-miR-134-5p(1), mmu-miR-16-5p(1), mmu-miR-200b-3p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-217-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-676-3p(1), mmu-miR-127-5p(1), mmu-miR-499-5p(1), mmu-miR-369-3p(1), mmu-miR-193b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGCTTTACAAAAGGATGTAATTAATA
siRNA sets
ATTAATTACATCCTTTTGT, TATTAATTACATCCTTTTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBTAF1_960_ORF_1
0.8764
-0.070128955
0.999764063
1704
ORF sequence:
ATGACTCTCCTTTCATCCATGTTAACTTACCCTCAGGTCCAGCAATGCAGTATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAGAACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAAGGTTTGGATGGAGCTTTTGAGCAAGGCGTCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGCCTAATGATGCAGCCTTCTCACTTACCTATTGATTTAAATATGCTGCTGGAAGTAAAAGCTAGAGCCAAGGAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAAGTTGTTAGGAGCACTCTGTTGCTATATTTGTGATCCAAGTGTAAATATGGTAAACCAGGAAATTAAACCAGCGGATTCCCTTGGCCAGTTACTGCTCTTCTATTTGAATTCCAAATCTGCTTTACAGAGAATTAGTGTTGCGTTAGTAATCTGTGAGTGGGCTGCTTTACAAAAGGATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGGTACCCTCCATTATAAATACCTTATGGGATTCTCTTCTGGAATTAGATGATCTAACAGCTTCAACAAATAGTATTATGACTCTCCTTTCATCCATGTTAACTTACCCTCAGGTCCAGCAATGCAGTATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAGAACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAAGGTTTGGATGGAGCTTTTGAGCAAGGCGTCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGCCTAATGATGCAGCCTTCTCACTTACCTATTGATTTAAATATGCTGCTGGAAGTAAAAGCTAGAGCCAAGGAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAAGTTGTTAGGAGCACTCTGTTGCTATATTTGTGATCCAAGTGTAAATATGGTAAACCAGGAAATTAAACCAGCGGATTCCCTTGGCCAGTTACTGCTCTTCTATTTGAATTCCAAATCTGCTTTACAGAGAATTAGTGTTGCGTTAGTAATCTGTGAGTGGGCTGCTTTACAAAAG
Peptide sequence:
MTLLSSMLTYPQVQQCSIQQSLTVLVPRVWPFLHHTISSVRRAALETLFTLLSTQDENSSSWLIPILSDMLRHIFQFCVLESSQEILDLIHKVWMELLSKASVQYLVAAACPWMSAWLCLMMQPSHLPIDLNMLLEVKARAKEKTGGKVRQGQIQNKEVLQEYIAGADTIMEDPATRDFVVMRARMMAAKLLGALCCYICDPSVNMVNQEIKPADSLGQLLLFYLNSKSALQRISVALVICEWAALQKDVINTLLPKVLTRIIEGLQDLDDDVRAVAAASLVPVVESLVYLQTQKVPSIINTLWDSLLELDDLTASTNSIMTLLSSMLTYPQVQQCSIQQSLTVLVPRVWPFLHHTISSVRRAALETLFTLLSTQDENSSSWLIPILSDMLRHIFQFCVLESSQEILDLIHKVWMELLSKASVQYLVAAACPWMSAWLCLMMQPSHLPIDLNMLLEVKARAKEKTGGKVRQGQIQNKEVLQEYIAGADTIMEDPATRDFVVMRARMMAAKLLGALCCYICDPSVNMVNQEIKPADSLGQLLLFYLNSKSALQRISVALVICEWAALQK
IRESfinder result
IRESfinder score
0.720609576
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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