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mmu_circBtaf1_1233
Basic information of circular RNA
PanCircBase ID:
mmu_circBtaf1_1233
mm39_Chr. Position ID:
chr19|36963854|36969984|+
Gene name:
Btaf1
Transcript:
ENSMUST00000099494.4
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
20,21,22,23,24,25
Exon/intron offsets:
0,1526,2421,2933,4268,5981
Genomic length:
6130
Exon/intron sizes in nt:
4,27,19,11,54,11,02,02,000
Flanking exon/introns:
chr19:36961052-36963854|chr19:36969984-36971669
Splice length:
1233
Other database IDs:
circBase: mmu_circ_0007732, CIRCpedia: MMU_CIRCpedia_18372, circAtlas: mmu-Btaf1_0032
circAtlas: hsa-BTAF1_0045
Human Ortholog IDs:
Mature spliced Sequence:
GTAACCACTATTTTTAATGAAGTCACATCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGTTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTACTGCAGCTGAGAGTACACACGTTTGCTGCGTGTGCTGTTGTGAGCTTGCAGCAGCTTCCGGAGAAACTAAATCCTATCATAAAACCATTAATGGAAACGATTAAAAAAGAAGAGAATACGCTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCAGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACGTGTCCAGTACCAACACAAAGTGGCCAGGAAAATTCTAAAGGATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAGGGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTGATGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTGCTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCTGTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGCTACTCAGTGCTTTGCA
59.89
TCATTTGGACCTGATGCCGT
59.67
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGCTACTCAGTGCTTTGCA
59.89
GTCATTTGGACCTGATGCCG
59.27
142
PCR template sequence:
AGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAGGTAACCACTATTTTTAATGAAGTCACATCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGTTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-93-5p(1), mmu-miR-32-5p(1), mmu-miR-103-3p(1), mmu-miR-150-5p(1), mmu-miR-25-3p(1), mmu-miR-138-5p(1), mmu-miR-136-5p(1), mmu-miR-370-3p(1), mmu-miR-340-5p(1), mmu-miR-107-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GATGCCACTTGAGGTAACCACTATTT
siRNA sets
ATAGTGGTTACCTCAAGTG,AATAGTGGTTACCTCAAGT,AAATAGTGGTTACCTCAAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBTAF1_1233_ORF_1
1.0697
0.053164675
0.999999211
2376
ORF sequence:
ATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTACTGCAGCTGAGAGTACACACGTTTGCTGCGTGTGCTGTTGTGAGCTTGCAGCAGCTTCCGGAGAAACTAAATCCTATCATAAAACCATTAATGGAAACGATTAAAAAAGAAGAGAATACGCTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCAGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACGTGTCCAGTACCAACACAAAGTGGCCAGGAAAATTCTAAAGGATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAGGGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTGATGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTGCTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCTGTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAGGTAACCACTATTTTTAATGAAGTCACATCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGTTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTACTGCAGCTGAGAGTACACACGTTTGCTGCGTGTGCTGTTGTGAGCTTGCAGCAGCTTCCGGAGAAACTAAATCCTATCATAAAACCATTAATGGAAACGATTAAAAAAGAAGAGAATACGCTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCAGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACGTGTCCAGTACCAACACAAAGTGGCCAGGAAAATTCTAAAGGATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAGGGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTGATGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTGCTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCTGTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG
Peptide sequence:
MTVAETNQEWQVLQLRVHTFAACAVVSLQQLPEKLNPIIKPLMETIKKEENTLVQNYAAQYIAKLLQQCTTRTPCPNSKVIKNLCSSLCVDPYLTPCVTCPVPTQSGQENSKGSNSEKDGMHHTVTKHRGIITLYRHQKAAFAITSRRGPIPKAIKAQIADLPAGSSGTILVELDEGQKPYLVQRRGAEFALTTIVKHFGAEMAVKLPHLWDAMVGPLKSMIDLNNFDGKSLLERGDVPAQELVNSLQVFEIAAASMDSALHPLLVQHLPHLYMCLQYPSTAVRHMAARCIGVMSKIATMETMNIFLEKVLPWLGAIDDNVKQEGAIEALACVMEQLDVGIVPYIVLLVVPVLGRMSDQTDSVRFMATQCFATLIRLMPLEVTTIFNEVTSTFDLNPQVLQQLDSKRHQVQMTVAETNQEWQVLQLRVHTFAACAVVSLQQLPEKLNPIIKPLMETIKKEENTLVQNYAAQYIAKLLQQCTTRTPCPNSKVIKNLCSSLCVDPYLTPCVTCPVPTQSGQENSKGSNSEKDGMHHTVTKHRGIITLYRHQKAAFAITSRRGPIPKAIKAQIADLPAGSSGTILVELDEGQKPYLVQRRGAEFALTTIVKHFGAEMAVKLPHLWDAMVGPLKSMIDLNNFDGKSLLERGDVPAQELVNSLQVFEIAAASMDSALHPLLVQHLPHLYMCLQYPSTAVRHMAARCIGVMSKIATMETMNIFLEKVLPWLGAIDDNVKQEGAIEALACVMEQLDVGIVPYIVLLVVPVLGRMSDQTDSVRFMATQCFATLIRLMPLE
IRESfinder result
IRESfinder score
0.618769066
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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