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mmu_circBptf_676
Basic information of circular RNA
PanCircBase ID:
mmu_circBptf_676
mm39_Chr. Position ID:
chr11|106971548|106973526|-
Gene name:
Bptf
Transcript:
ENSMUST00000057892.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
7,6,5
Exon/intron offsets:
0,493,1790
Genomic length:
1978
Exon/intron sizes in nt:
132,356,188
Flanking exon/introns:
chr11:106969475-106971548|chr11:106973526-106986541
Splice length:
676
Other database IDs:
CIRCpedia: MMU_CIRCpedia_2021, circAtlas: mmu-Bptf_0033
Human Ortholog IDs:
Mature spliced Sequence:
GTGATTTCAGACTGGAGAAGTCCAATGGAGAAGTTTCCGAGTCCCCTGGAGCTGGGAAAGGAACATCTGGGTCCACTCGTATCATCACCAGACTGAGGAACCCGGAGAGCAAACTCAGTCAGCTCAAGAGTCAGCAGGTGGCAGCTGCAGCCCATGAAGCAAATAAATTGTTTAAGGAGGGGAAAGAGGTGCTGGTGGTTAACTCCCAAGGAGAGGTTTCACGGCTGAGCACCAAAAAGGAGGTGGTCATGAAAGGGAACATCAACAACTATTTTAAGCTGGGACAAGAAGGGAAGTATCGAGTCTACCACAATCAATACTCGACCAATTCATTTGCTCTGAATAAACACCAGCACAGAGAAGACCATGATAAGAGGAGGCATCTTGCACATAAATTCTGTCTCACTCCAGCTGGGGAGTTCAAATGGAACGGGTCTGTTCACGGGTCCAAAGTCCTTACCATCTCAACCCTGAGACTCACCATCACACAGCTAGAGAGCAACATTCCTTCATCCTTCCTTCACCCCAATTGGGCTTCACACAGGGCTAATTGGATCAAGGCCGTTCAGATGTGTAGTAAACCCAGAGAGTTTGCGTTGGCTCTCGCAATTCTGGAGTGTGCAGTTAAGCCAGTTGTGATGCTGCCAATATGGCGGGAGTCTCTAGGACATACCCG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGTTGGCTCTCGCAATTCTG
59.9
CGAGTGGACCCAGATGTTCC
60.11
161
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGCTCTCGCAATTCTGGAGT
60.11
CGAGTGGACCCAGATGTTCC
60.11
157
PCR template sequence:
GTAAACCCAGAGAGTTTGCGTTGGCTCTCGCAATTCTGGAGTGTGCAGTTAAGCCAGTTGTGATGCTGCCAATATGGCGGGAGTCTCTAGGACATACCCGGTGATTTCAGACTGGAGAAGTCCAATGGAGAAGTTTCCGAGTCCCCTGGAGCTGGGAAAGGAACATCTGGGTCCACTCGTATCATCACCAGACTGAGGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-15a-5p(1), mmu-miR-32-5p(1), mmu-miR-103-3p(1), mmu-miR-211-5p(1), mmu-miR-138-5p(1), mmu-miR-136-5p(1), mmu-miR-22-3p(1), mmu-miR-107-3p(1), mmu-miR-207(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TAGGACATACCCGGTGATTTCAGACT
siRNA sets
AAATCACCGGGTATGTCCT, TGAAATCACCGGGTATGTC, GAAATCACCGGGTATGTCC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBPTF_676_ORF_1
0.7053
0.073711458
0.367187633
432
ORF sequence:
ATGAAAGGGAACATCAACAACTATTTTAAGCTGGGACAAGAAGGGAAGTATCGAGTCTACCACAATCAATACTCGACCAATTCATTTGCTCTGAATAAACACCAGCACAGAGAAGACCATGATAAGAGGAGGCATCTTGCACATAAATTCTGTCTCACTCCAGCTGGGGAGTTCAAATGGAACGGGTCTGTTCACGGGTCCAAAGTCCTTACCATCTCAACCCTGAGACTCACCATCACACAGCTAGAGAGCAACATTCCTTCATCCTTCCTTCACCCCAATTGGGCTTCACACAGGGCTAATTGGATCAAGGCCGTTCAGATGTGTAGTAAACCCAGAGAGTTTGCGTTGGCTCTCGCAATTCTGGAGTGTGCAGTTAAGCCAGTTGTGATGCTGCCAATATGGCGGGAGTCTCTAGGACATACCCGGTGA
Peptide sequence:
MKGNINNYFKLGQEGKYRVYHNQYSTNSFALNKHQHREDHDKRRHLAHKFCLTPAGEFKWNGSVHGSKVLTISTLRLTITQLESNIPSSFLHPNWASHRANWIKAVQMCSKPREFALALAILECAVKPVVMLPIWRESLGHTR
IRESfinder result
IRESfinder score
0.69532211
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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