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mmu_circBmt2_313
Basic information of circular RNA
PanCircBase ID:
mmu_circBmt2_313
mm39_Chr. Position ID:
chr6|13641685|13663342|-
Gene name:
Bmt2
Transcript:
ENSMUST00000045235.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
3,2
Exon/intron offsets:
0,21515
Genomic length:
21657
Exon/intron sizes in nt:
1,71,142
Flanking exon/introns:
chr6:13630703-13641685|chr6:13663342-13677678
Splice length:
313
Other database IDs:
circAtlas: mmu-B630005N14Rik_0001
circBase: hsa_circ_0004708, circAtlas: hsa-BMT2_0001, CIRCpedia: HSA_CIRCpedia_68353
Human Ortholog IDs:
Mature spliced Sequence:
TGGGAGACTTTGATAAGATCTGGCGAGAACACTGTGAAGATGCGGAAACACTTTGCGAATATGCTGTTGCAATGAAAAATCTGGCAGATAATCACTGGGCAAAAACTTGTGAGGGTGAAGGTCGCATTGAATGGTGTTGTAGTGTATGCAGAGAGTACTTCCAAAATGGTGGGAAAAGAAAAGCACTTGAGAAAGATGAAAAACGAGCTGTCCTCGCCACTAAGACCACTCCAGCCTTAAACGTGCACGAGTCTTCTAAACTTGAAGGTCCTTTAACAAACCTCAGCTTTACAAGCCCTGACTTTATAACTGA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACTCCAGCCTTAAACGTGCA
59.89
TCGCAAAGTGTTTCCGCATC
59.76
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CGCCACTAAGACCACTCCAG
60.11
TCGCAAAGTGTTTCCGCATC
59.76
157
PCR template sequence:
TCGCCACTAAGACCACTCCAGCCTTAAACGTGCACGAGTCTTCTAAACTTGAAGGTCCTTTAACAAACCTCAGCTTTACAAGCCCTGACTTTATAACTGATGGGAGACTTTGATAAGATCTGGCGAGAACACTGTGAAGATGCGGAAACACTTTGCGAATATGCTGTTGCAATGAAAAATCTGGCAGATAATCACTGGGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-320-3p(1), mmu-miR-335-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ACTTTATAACTGATGGGAGACTTTGA
siRNA sets
AAAGTCTCCCATCAGTTAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBMT2_313_ORF_1
0.9888
0.091939773
0.311838773
312
ORF sequence:
ATGGGAGACTTTGATAAGATCTGGCGAGAACACTGTGAAGATGCGGAAACACTTTGCGAATATGCTGTTGCAATGAAAAATCTGGCAGATAATCACTGGGCAAAAACTTGTGAGGGTGAAGGTCGCATTGAATGGTGTTGTAGTGTATGCAGAGAGTACTTCCAAAATGGTGGGAAAAGAAAAGCACTTGAGAAAGATGAAAAACGAGCTGTCCTCGCCACTAAGACCACTCCAGCCTTAAACGTGCACGAGTCTTCTAAACTTGAAGGTCCTTTAACAAACCTCAGCTTTACAAGCCCTGACTTTATAACT
Peptide sequence:
MGDFDKIWREHCEDAETLCEYAVAMKNLADNHWAKTCEGEGRIEWCCSVCREYFQNGGKRKALEKDEKRAVLATKTTPALNVHESSKLEGPLTNLSFTSPDFIT
IRESfinder result
IRESfinder score
0.565195195
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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