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mmu_circBmp1_1814
Basic information of circular RNA
PanCircBase ID:
mmu_circBmp1_1814
mm39_Chr. Position ID:
chr14|70723586|70732255|-
Gene name:
Bmp1
Transcript:
ENSMUST00000226906.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
16,15,14,13,12,11,10,9
Exon/intron offsets:
0,3873,4400,5204,5929,6258,6632,8566
Genomic length:
8669
Exon/intron sizes in nt:
7,84,18,11,61,12,61,96,00,00,00,000
Flanking exon/introns:
chr14:70717721-70723586|chr14:70732255-70742121
Splice length:
1814
Other database IDs:
circAtlas: mmu-Bmp1_0010
Human Ortholog IDs:
Mature spliced Sequence:
ATTATTCTAAACTTCACATCCATGGACCTGTACCGTAGCCGCCTGTGCTGGTATGACTATGTGGAGGTGCGGGATGGCTTCTGGAGAAAGGCGCCCCTCCGAGGCCGGTTCTGTGGGGGCAAACTCCCCGAGCCCATCGTCTCCACCGACAGCCGCCTCTGGGTGGAATTCCGAAGCAGCAGCAACTGGGTTGGAAAGGGCTTCTTTGCTGTCTATGAAGCCATTTGCGGTGGCGATGTGAAAAAGGATAATGGCCATATCCAGTCTCCCAATTACCCAGACGATTATCGGCCCAGCAAAGTCTGCATCTGGCGGATCCAGGTGTCTGAGGGTTTCCACGTGGGCCTCACGTTCCAGTCCTTTGAGATTGAGCGTCACGACAGTTGTGCCTACGACTACCTGGAAGTCCGTGATGGGCACAGCGAGAGCAGCAACCTCATTGGGCGCTACTGTGGCTATGAGAAGCCTGATGACATCAAAAGCACATCCAGTCGGCTCTGGCTCAAGTTCGTCTCTGACGGGTCCATTAACAAAGCTGGCTTCGCAGTCAACTTTTTCAAAGAGGTGGATGAGTGTTCAAGGCCCAACCGCGGGGGCTGTGAGCAGCGGTGCCTGAACACCCTGGGCAGCTACAAGTGCAGCTGTGACCCTGGCTATGAGCTGGCCCCAGACAAGCGTCGGTGTGAGGCTGCCTGTGGTGGATTCCTCACCAAGCTCAATGGCTCCATCACCAGCCCCGGTTGGCCCAAAGAGTACCCTCCCAACAAAAACTGCATCTGGCAGTTGGTGGCCCCCACCCAGTACCGTATCTCCCTGCAATTTGACTTCTTCGAGACTGAGGGCAATGATGTGTGCAAGTACGACTTTGTGGAGGTGCGCAGCGGACTCACGGCGGACTCTAAGCTGCATGGCAAGTTCTGCGGCTCCGAGAAGCCAGAGGTCATCACTTCCCAGTACAACAATATGCGTGTGGAGTTCAAGTCTGACAATACTGTGTCCAAAAAGGGCTTCAAGGCCCACTTCTTCTCAGAAAAGAGGCCAGCTCTGCAGCCCCCTCGGGGACGCCCCCACCAGCTCAAATTCCGAGTGCAGAAAAGAAACCGGACCCCCCAATGAGGCCTGCCAGGCCCCCAGACCCTTCATTACTCAGGAAGCTCACCTCGGACGGAGTGGGCTGGGGGCTTTGGAGCCCACCCGTTCCCTGCCTCCACTCTGCCATTCCGGCCGCCTCCTTTGGCTGGACAGAACTGGTGCTCTCCTCTCCCCCCCGCCCCCTCCCATTTTGATGGTGTCTGTGACATTTCCTGTTGTGAAGTAAAAGAGGGACCCCTGCGTCCTGCTCCTTTCTCTTGCAGTCTGCTTGTCCCTGTGTCTGTTTTTCCACTTGTCCGTCTGTCCAGTAAGCAGGTAATGGTAGAGGTTCCCATGCTGGTCAGCTCCAGACCCCAGCCCTCCCTCCACCCTTCTGCCCACCTCTACCTTCTCTGCCCAGAGCGGAGGCCCACCCAGCTGGCCCCACTGAAGCAGTGACCAGAGCTCCATCGTCACCCTCACCTCCCACTCTGCACCCAGCCCCCCTGTGCGAGCACGCCCTCCCACAGGAGGAAGCCCCACCAGGCCTCCCACTTCCCCTGGGGTGAGCAGACCTCAGCCCACACAGACCCACTGCTCTCGTTTGCACCCTACAGATAAGGATGAATGTTCCAAGGACAATGGTGGATGCCAGCAAGACTGTGTGAACACGTTCGGCAGCTACGAGTGTCAGTGCCGCAGTGGCTTCGTCCTTCACGACAACAAACATGACTGTAAAGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCCAGCAAGACTGTGTGAA
60.11
CATCCCGCACCTCCACATAG
60.25
170
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATGCCAGCAAGACTGTGTGA
59.89
CATCCCGCACCTCCACATAG
60.25
171
PCR template sequence:
GGTGGATGCCAGCAAGACTGTGTGAACACGTTCGGCAGCTACGAGTGTCAGTGCCGCAGTGGCTTCGTCCTTCACGACAACAAACATGACTGTAAAGAAGATTATTCTAAACTTCACATCCATGGACCTGTACCGTAGCCGCCTGTGCTGGTATGACTATGTGGAGGTGCGGGATGGCTTCTGGAGAAAGGCGCCCCTCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-705(3), mmu-miR-673-5p(2), mmu-miR-181a-5p(1), mmu-miR-29b-3p(1), mmu-miR-138-5p(1), mmu-miR-181b-5p(1), mmu-miR-431-5p(1), mmu-miR-218-5p(1), mmu-miR-3061-5p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GACTGTAAAGAAGATTATTCTAAACT
siRNA sets
TTAGAATAATCTTCTTTAC, TTTAGAATAATCTTCTTTA, AATAATCTTCTTTACAGTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBMP1_1814_ORF_1
0.7843
0.451743509
0.997848085
1131
ORF sequence:
ATGACTGTAAAGAAGATTATTCTAAACTTCACATCCATGGACCTGTACCGTAGCCGCCTGTGCTGGTATGACTATGTGGAGGTGCGGGATGGCTTCTGGAGAAAGGCGCCCCTCCGAGGCCGGTTCTGTGGGGGCAAACTCCCCGAGCCCATCGTCTCCACCGACAGCCGCCTCTGGGTGGAATTCCGAAGCAGCAGCAACTGGGTTGGAAAGGGCTTCTTTGCTGTCTATGAAGCCATTTGCGGTGGCGATGTGAAAAAGGATAATGGCCATATCCAGTCTCCCAATTACCCAGACGATTATCGGCCCAGCAAAGTCTGCATCTGGCGGATCCAGGTGTCTGAGGGTTTCCACGTGGGCCTCACGTTCCAGTCCTTTGAGATTGAGCGTCACGACAGTTGTGCCTACGACTACCTGGAAGTCCGTGATGGGCACAGCGAGAGCAGCAACCTCATTGGGCGCTACTGTGGCTATGAGAAGCCTGATGACATCAAAAGCACATCCAGTCGGCTCTGGCTCAAGTTCGTCTCTGACGGGTCCATTAACAAAGCTGGCTTCGCAGTCAACTTTTTCAAAGAGGTGGATGAGTGTTCAAGGCCCAACCGCGGGGGCTGTGAGCAGCGGTGCCTGAACACCCTGGGCAGCTACAAGTGCAGCTGTGACCCTGGCTATGAGCTGGCCCCAGACAAGCGTCGGTGTGAGGCTGCCTGTGGTGGATTCCTCACCAAGCTCAATGGCTCCATCACCAGCCCCGGTTGGCCCAAAGAGTACCCTCCCAACAAAAACTGCATCTGGCAGTTGGTGGCCCCCACCCAGTACCGTATCTCCCTGCAATTTGACTTCTTCGAGACTGAGGGCAATGATGTGTGCAAGTACGACTTTGTGGAGGTGCGCAGCGGACTCACGGCGGACTCTAAGCTGCATGGCAAGTTCTGCGGCTCCGAGAAGCCAGAGGTCATCACTTCCCAGTACAACAATATGCGTGTGGAGTTCAAGTCTGACAATACTGTGTCCAAAAAGGGCTTCAAGGCCCACTTCTTCTCAGAAAAGAGGCCAGCTCTGCAGCCCCCTCGGGGACGCCCCCACCAGCTCAAATTCCGAGTGCAGAAAAGAAACCGGACCCCCCAATGA
Peptide sequence:
MTVKKIILNFTSMDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGGKLPEPIVSTDSRLWVEFRSSSNWVGKGFFAVYEAICGGDVKKDNGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSFEIERHDSCAYDYLEVRDGHSESSNLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSKLHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHFFSEKRPALQPPRGRPHQLKFRVQKRNRTPQ
IRESfinder result
IRESfinder score
0.462490856
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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