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mmu_circBirc6_645
Basic information of circular RNA
PanCircBase ID:
mmu_circBirc6_645
mm39_Chr. Position ID:
chr17|74916053|74918204|+
Gene name:
Birc6
Transcript:
ENSMUST00000180037.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
24,25,26
Exon/intron offsets:
0,578,1936
Genomic length:
2151
Exon/intron sizes in nt:
330,100,215
Flanking exon/introns:
chr17:74915279-74916053|chr17:74918204-74918342
Splice length:
645
Other database IDs:
circAtlas: mmu-Birc6_0128
Human Ortholog IDs:
Mature spliced Sequence:
AAAGCAAAGCTGGAAGCCAAGCTGCATCAGACAACAGCGGCAGCAGCAGCAGCTGCATCAGCAGCGGCAGCAGCAGCAGCAGGTCCTGTTCACAATGCAGTGCCTTCCAACCCAGTGGCTGCTCCTGGATTCTTCATCCATCCATCTGATGTTATTCCCCCCACTCCAAAAACAACACCACTCTTTATGACTCCACCGCTGACTCCGCCCAACGAAGCTGTTTCTGTTGTGATTAATGCTGAGCTTGCCCAGCTTTTCCCAGGCTCAGTCATTGATCCTCCCGCAGTGAATCTTGCTGCACAGAACAAAAACTCCAGCAAATCTAGAATGAATCCACTTGGTTCTGGCCTGGCCCTTGCAATTTCTCATGCCTCACATTTTCTTCAGCCGCCACCTCACCAGTCCATTATTATAGAGCGAATGCATTCAGGAGCCAGGAGATTTGTCACCCTGGATTTTGGAAGACCTATACTGCTGACAGATGTACTGATTCCTACTTGTGGAGACTTGGCGTCTTTATCAATTGACATATGGACATTAGGGGAAGAAGTAGATGGAAGGCGTTTGGTTGTGGCAACTGATATCAGTACTCATTCACTAATTCTTCATGACTTAATACCTCCACCTGTATGCAGATTCATGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGTTTGGTTGTGGCAACTGA
59.55
TTGTGAACAGGACCTGCTGC
60.82
179
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CGTTTGGTTGTGGCAACTGA
59.55
TGAACAGGACCTGCTGCTG
59.93
176
PCR template sequence:
AGAAGTAGATGGAAGGCGTTTGGTTGTGGCAACTGATATCAGTACTCATTCACTAATTCTTCATGACTTAATACCTCCACCTGTATGCAGATTCATGAAGAAAGCAAAGCTGGAAGCCAAGCTGCATCAGACAACAGCGGCAGCAGCAGCAGCTGCATCAGCAGCGGCAGCAGCAGCAGCAGGTCCTGTTCACAATGCAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-124-3p(1), mmu-miR-217-5p(1), mmu-miR-320-3p(1), mmu-miR-149-5p(1), mmu-miR-202-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CAGATTCATGAAGAAAGCAAAGCTGG
siRNA sets
TTTGCTTTCTTCATGAATC, TTGCTTTCTTCATGAATCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBIRC6_645_ORF_1
1.1764
0.013073894
0.992858923
1104
ORF sequence:
ATGACTCCACCGCTGACTCCGCCCAACGAAGCTGTTTCTGTTGTGATTAATGCTGAGCTTGCCCAGCTTTTCCCAGGCTCAGTCATTGATCCTCCCGCAGTGAATCTTGCTGCACAGAACAAAAACTCCAGCAAATCTAGAATGAATCCACTTGGTTCTGGCCTGGCCCTTGCAATTTCTCATGCCTCACATTTTCTTCAGCCGCCACCTCACCAGTCCATTATTATAGAGCGAATGCATTCAGGAGCCAGGAGATTTGTCACCCTGGATTTTGGAAGACCTATACTGCTGACAGATGTACTGATTCCTACTTGTGGAGACTTGGCGTCTTTATCAATTGACATATGGACATTAGGGGAAGAAGTAGATGGAAGGCGTTTGGTTGTGGCAACTGATATCAGTACTCATTCACTAATTCTTCATGACTTAATACCTCCACCTGTATGCAGATTCATGAAGAAAGCAAAGCTGGAAGCCAAGCTGCATCAGACAACAGCGGCAGCAGCAGCAGCTGCATCAGCAGCGGCAGCAGCAGCAGCAGGTCCTGTTCACAATGCAGTGCCTTCCAACCCAGTGGCTGCTCCTGGATTCTTCATCCATCCATCTGATGTTATTCCCCCCACTCCAAAAACAACACCACTCTTTATGACTCCACCGCTGACTCCGCCCAACGAAGCTGTTTCTGTTGTGATTAATGCTGAGCTTGCCCAGCTTTTCCCAGGCTCAGTCATTGATCCTCCCGCAGTGAATCTTGCTGCACAGAACAAAAACTCCAGCAAATCTAGAATGAATCCACTTGGTTCTGGCCTGGCCCTTGCAATTTCTCATGCCTCACATTTTCTTCAGCCGCCACCTCACCAGTCCATTATTATAGAGCGAATGCATTCAGGAGCCAGGAGATTTGTCACCCTGGATTTTGGAAGACCTATACTGCTGACAGATGTACTGATTCCTACTTGTGGAGACTTGGCGTCTTTATCAATTGACATATGGACATTAGGGGAAGAAGTAGATGGAAGGCGTTTGGTTGTGGCAACTGATATCAGTACTCATTCACTAATTCTTCATGACTTAATACCTCCACCTGTATGCAGATTCATGAAG
Peptide sequence:
MTPPLTPPNEAVSVVINAELAQLFPGSVIDPPAVNLAAQNKNSSKSRMNPLGSGLALAISHASHFLQPPPHQSIIIERMHSGARRFVTLDFGRPILLTDVLIPTCGDLASLSIDIWTLGEEVDGRRLVVATDISTHSLILHDLIPPPVCRFMKKAKLEAKLHQTTAAAAAAASAAAAAAAGPVHNAVPSNPVAAPGFFIHPSDVIPPTPKTTPLFMTPPLTPPNEAVSVVINAELAQLFPGSVIDPPAVNLAAQNKNSSKSRMNPLGSGLALAISHASHFLQPPPHQSIIIERMHSGARRFVTLDFGRPILLTDVLIPTCGDLASLSIDIWTLGEEVDGRRLVVATDISTHSLILHDLIPPPVCRFMK
IRESfinder result
IRESfinder score
0.690405317
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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