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mmu_circBirc6_1587
Basic information of circular RNA
PanCircBase ID:
mmu_circBirc6_1587
mm39_Chr. Position ID:
chr17|74975753|75004514|+
Gene name:
Birc6
Transcript:
ENSMUST00000180037.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
10
Exon/intron indexes:
63,64,65,66,67,68,69,70,71,72
Exon/intron offsets:
0,1455,8407,20459,21599,22243,23425,24689,27478,28626
Genomic length:
28761
Exon/intron sizes in nt:
16,51,69,21,41,46,11,10,00,00,00,00,00,000
Flanking exon/introns:
chr17:74969813-74975753|chr17:75004514-75009198
Splice length:
1587
Other database IDs:
circBase: mmu_circ_0007008, CIRCpedia: MMU_CIRCpedia_28835, circAtlas: mmu-Birc6_0088
Human Ortholog IDs:
Mature spliced Sequence:
CCGCAGGTGTCAAATTCCCATAACCCCACATCAGCAGAAGAACAGCAGCTGTACTGGGCCAAAGGGACTGGCTTTGGCACAGGTTCCACGGCATCAGGATGGGACGTGGAACAAGCCTTAACTAAACAGAGGCTAGAAGAGGAGCATGTGACCTGCCTTTTGCAGGTCCTTGCGAGTTACATAAACCCCATGAGTGGTGCTGTCAATGGGGAAGCCCAGGCGTCTCCCGAGAGCCGCGCCCAGAACAGCAGTGCTCTGCCCTCGGTGCTTCTGGAGCTCCTCAGTCAGTCCTGCCTCATCCCAGCCATGTCCTCCTACCTGCGCAACGACTCCGTTCTGGACATGGCAAGACATGTGCCACTCTATCGTGCTCTGCTAGAGTTGCTCCGCGCCATTGCTTCTTGCACATCTATGGTGCCGCTGTTGTTGCCTCTTTCTACAGAGAATGGTGAAGAAGAGGAAGATGAACAGTCAGAATGTCAAACTTCTGTTGGTACATTATTAGCTAAAATGAAGACCTGTGTCGATACCTACACCAACCGCCTAAGATCTAAAAGGGAAAATGTGAAAGCCGGAGTCAAGCCGGACGCGCCTGATCAAGAGCCCGAAGGACTTGCGCTTCTGGTCCCCGACATCCAGAGGACTGCTGAGATCGTCCACGCCGCCACCGCCAATCTGCGGCAAGCCAATCAAGAAAAAAAACTAGGTGAATACTCAAAGAAGGTGGTTATGAAACCCAAACCTCTGTCAGTATTAAAATCACTTGAAGAAAAATATGTGGCTGTCATGAAAAAACTGCAGTTTGATACATTTGAAATGGTTTCTGAAGATGACGATGGGAAATTGGGTTTTAAAGTAAATTACCACTACATGTCTCAGGTGAAAAATGCCAACGATGCCAACAGTGCTGCCAGAGCCCGCCGCCTGGCTCAAGAAGCGGTGACACTGTCAACCTCACTGCCTCTGTCATCGTCTTCCAGTGTCTTTGTACGCTGTGATGAGGAGCGACTTGACATCATGAAGGTTCTGATAACCGGGCCAGCGGACACCCCCTATGCAAATGGCTGCTTTGAGTTTGATGTATATTTTCCTCAAGATTATCCTAGCTCACCTCCTCTAGTGAACCTAGAAACAACTGGGGGTCATAGTGTGCGCTTCAATCCCAACCTTTACAATGATGGCAAGGTTTGTTTAAGCATCCTGAATACATGGCATGGAAGACCAGAAGAGAAGTGGAACCCTCAGACATCAAGCTTTTTGCAAGTGTTGGTTTCTGTCCAGTCCCTTATATTAGTAGCTGAGCCTTACTTCAATGAACCAGGATATGAACGGTCTAGAGGCACTCCCAGTGGTACACAGAGCTCTCGAGAATACGATGGGAACATCCGACAAGCAACGGTTAAATGGGCTATGCTAGAACAAATCAGAAATCCTTCACCGTGCTTTAAAGAAGTTATACACAAACATTTTTACTTGAAGAGAATTGAGCTCATGGCCCAGTGTGAGGAGTGGATTGCAGACATCCAGCAGTACAGCAGTGACAAGCGGGTGGGCAGGACCATGTCTCACCATGCAGCTGCTCTCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGATTGCAGACATCCAGCA
59.67
GTCCCTTTGGCCCAGTACAG
60.32
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGATTGCAGACATCCAGCA
59.67
CAGTCCCTTTGGCCCAGTAC
60.32
148
PCR template sequence:
GCTCATGGCCCAGTGTGAGGAGTGGATTGCAGACATCCAGCAGTACAGCAGTGACAAGCGGGTGGGCAGGACCATGTCTCACCATGCAGCTGCTCTCAAGCCGCAGGTGTCAAATTCCCATAACCCCACATCAGCAGAAGAACAGCAGCTGTACTGGGCCAAAGGGACTGGCTTTGGCACAGGTTCCACGGCATCAGGAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
17
Interacting miRNAs (#binding sites)
mmu-miR-204-5p(2), mmu-let-7a-5p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-34c-5p(1), mmu-let-7c-5p(1), mmu-miR-211-5p(1), mmu-let-7d-5p(1), mmu-miR-433-3p(1), mmu-miR-676-3p(1), mmu-miR-370-3p(1), mmu-miR-541-5p(1), mmu-miR-335-3p(1), mmu-miR-697(1), mmu-miR-1904(1), mmu-miR-296-3p(1), mmu-miR-542-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AGCTGCTCTCAAGCCGCAGGTGTCAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBIRC6_1587_ORF_1
0.9284
0.221958173
0.999999994
2985
ORF sequence:
ATGAGTGGTGCTGTCAATGGGGAAGCCCAGGCGTCTCCCGAGAGCCGCGCCCAGAACAGCAGTGCTCTGCCCTCGGTGCTTCTGGAGCTCCTCAGTCAGTCCTGCCTCATCCCAGCCATGTCCTCCTACCTGCGCAACGACTCCGTTCTGGACATGGCAAGACATGTGCCACTCTATCGTGCTCTGCTAGAGTTGCTCCGCGCCATTGCTTCTTGCACATCTATGGTGCCGCTGTTGTTGCCTCTTTCTACAGAGAATGGTGAAGAAGAGGAAGATGAACAGTCAGAATGTCAAACTTCTGTTGGTACATTATTAGCTAAAATGAAGACCTGTGTCGATACCTACACCAACCGCCTAAGATCTAAAAGGGAAAATGTGAAAGCCGGAGTCAAGCCGGACGCGCCTGATCAAGAGCCCGAAGGACTTGCGCTTCTGGTCCCCGACATCCAGAGGACTGCTGAGATCGTCCACGCCGCCACCGCCAATCTGCGGCAAGCCAATCAAGAAAAAAAACTAGGTGAATACTCAAAGAAGGTGGTTATGAAACCCAAACCTCTGTCAGTATTAAAATCACTTGAAGAAAAATATGTGGCTGTCATGAAAAAACTGCAGTTTGATACATTTGAAATGGTTTCTGAAGATGACGATGGGAAATTGGGTTTTAAAGTAAATTACCACTACATGTCTCAGGTGAAAAATGCCAACGATGCCAACAGTGCTGCCAGAGCCCGCCGCCTGGCTCAAGAAGCGGTGACACTGTCAACCTCACTGCCTCTGTCATCGTCTTCCAGTGTCTTTGTACGCTGTGATGAGGAGCGACTTGACATCATGAAGGTTCTGATAACCGGGCCAGCGGACACCCCCTATGCAAATGGCTGCTTTGAGTTTGATGTATATTTTCCTCAAGATTATCCTAGCTCACCTCCTCTAGTGAACCTAGAAACAACTGGGGGTCATAGTGTGCGCTTCAATCCCAACCTTTACAATGATGGCAAGGTTTGTTTAAGCATCCTGAATACATGGCATGGAAGACCAGAAGAGAAGTGGAACCCTCAGACATCAAGCTTTTTGCAAGTGTTGGTTTCTGTCCAGTCCCTTATATTAGTAGCTGAGCCTTACTTCAATGAACCAGGATATGAACGGTCTAGAGGCACTCCCAGTGGTACACAGAGCTCTCGAGAATACGATGGGAACATCCGACAAGCAACGGTTAAATGGGCTATGCTAGAACAAATCAGAAATCCTTCACCGTGCTTTAAAGAAGTTATACACAAACATTTTTACTTGAAGAGAATTGAGCTCATGGCCCAGTGTGAGGAGTGGATTGCAGACATCCAGCAGTACAGCAGTGACAAGCGGGTGGGCAGGACCATGTCTCACCATGCAGCTGCTCTCAAGCCGCAGGTGTCAAATTCCCATAACCCCACATCAGCAGAAGAACAGCAGCTGTACTGGGCCAAAGGGACTGGCTTTGGCACAGGTTCCACGGCATCAGGATGGGACGTGGAACAAGCCTTAACTAAACAGAGGCTAGAAGAGGAGCATGTGACCTGCCTTTTGCAGGTCCTTGCGAGTTACATAAACCCCATGAGTGGTGCTGTCAATGGGGAAGCCCAGGCGTCTCCCGAGAGCCGCGCCCAGAACAGCAGTGCTCTGCCCTCGGTGCTTCTGGAGCTCCTCAGTCAGTCCTGCCTCATCCCAGCCATGTCCTCCTACCTGCGCAACGACTCCGTTCTGGACATGGCAAGACATGTGCCACTCTATCGTGCTCTGCTAGAGTTGCTCCGCGCCATTGCTTCTTGCACATCTATGGTGCCGCTGTTGTTGCCTCTTTCTACAGAGAATGGTGAAGAAGAGGAAGATGAACAGTCAGAATGTCAAACTTCTGTTGGTACATTATTAGCTAAAATGAAGACCTGTGTCGATACCTACACCAACCGCCTAAGATCTAAAAGGGAAAATGTGAAAGCCGGAGTCAAGCCGGACGCGCCTGATCAAGAGCCCGAAGGACTTGCGCTTCTGGTCCCCGACATCCAGAGGACTGCTGAGATCGTCCACGCCGCCACCGCCAATCTGCGGCAAGCCAATCAAGAAAAAAAACTAGGTGAATACTCAAAGAAGGTGGTTATGAAACCCAAACCTCTGTCAGTATTAAAATCACTTGAAGAAAAATATGTGGCTGTCATGAAAAAACTGCAGTTTGATACATTTGAAATGGTTTCTGAAGATGACGATGGGAAATTGGGTTTTAAAGTAAATTACCACTACATGTCTCAGGTGAAAAATGCCAACGATGCCAACAGTGCTGCCAGAGCCCGCCGCCTGGCTCAAGAAGCGGTGACACTGTCAACCTCACTGCCTCTGTCATCGTCTTCCAGTGTCTTTGTACGCTGTGATGAGGAGCGACTTGACATCATGAAGGTTCTGATAACCGGGCCAGCGGACACCCCCTATGCAAATGGCTGCTTTGAGTTTGATGTATATTTTCCTCAAGATTATCCTAGCTCACCTCCTCTAGTGAACCTAGAAACAACTGGGGGTCATAGTGTGCGCTTCAATCCCAACCTTTACAATGATGGCAAGGTTTGTTTAAGCATCCTGAATACATGGCATGGAAGACCAGAAGAGAAGTGGAACCCTCAGACATCAAGCTTTTTGCAAGTGTTGGTTTCTGTCCAGTCCCTTATATTAGTAGCTGAGCCTTACTTCAATGAACCAGGATATGAACGGTCTAGAGGCACTCCCAGTGGTACACAGAGCTCTCGAGAATACGATGGGAACATCCGACAAGCAACGGTTAAATGGGCTATGCTAGAACAAATCAGAAATCCTTCACCGTGCTTTAAAGAAGTTATACACAAACATTTTTACTTGAAGAGAATTGAGCTCATGGCCCAGTGTGAGGAGTGGATTGCAGACATCCAGCAGTACAGCAGTGACAAGCGGGTGGGCAGGACCATGTCTCACCATGCAGCTGCTCTCAAG
Peptide sequence:
MSGAVNGEAQASPESRAQNSSALPSVLLELLSQSCLIPAMSSYLRNDSVLDMARHVPLYRALLELLRAIASCTSMVPLLLPLSTENGEEEEDEQSECQTSVGTLLAKMKTCVDTYTNRLRSKRENVKAGVKPDAPDQEPEGLALLVPDIQRTAEIVHAATANLRQANQEKKLGEYSKKVVMKPKPLSVLKSLEEKYVAVMKKLQFDTFEMVSEDDDGKLGFKVNYHYMSQVKNANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRIELMAQCEEWIADIQQYSSDKRVGRTMSHHAAALKPQVSNSHNPTSAEEQQLYWAKGTGFGTGSTASGWDVEQALTKQRLEEEHVTCLLQVLASYINPMSGAVNGEAQASPESRAQNSSALPSVLLELLSQSCLIPAMSSYLRNDSVLDMARHVPLYRALLELLRAIASCTSMVPLLLPLSTENGEEEEDEQSECQTSVGTLLAKMKTCVDTYTNRLRSKRENVKAGVKPDAPDQEPEGLALLVPDIQRTAEIVHAATANLRQANQEKKLGEYSKKVVMKPKPLSVLKSLEEKYVAVMKKLQFDTFEMVSEDDDGKLGFKVNYHYMSQVKNANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRIELMAQCEEWIADIQQYSSDKRVGRTMSHHAAALK
IRESfinder result
IRESfinder score
0.453491005
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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