top of page
mmu_circBirc6_1548
Basic information of circular RNA
PanCircBase ID:
mmu_circBirc6_1548
mm39_Chr. Position ID:
chr17|74886159|74893097|+
Gene name:
Birc6
Transcript:
ENSMUST00000180037.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
9,10
Exon/intron offsets:
0,6788
Genomic length:
6938
Exon/intron sizes in nt:
13,98,150
Flanking exon/introns:
chr17:74880626-74886159|chr17:74893097-74896589
Splice length:
1548
Other database IDs:
circAtlas: mmu-Birc6_0050
Human Ortholog IDs:
Mature spliced Sequence:
GGCATACATCACAGAAGGAAGCCATGGAAGTAAGCCTTGATATAACAGCTCTCAGCATTCTCCAGCAGCCAGAAAAACTGCAGTGGGAGATTGTGGCTAATGTGCTTGAAGATACTGTTAAGGATCTTGAAGAACTTGGGGCAAACCCCTCCCTAACGAACTCTAAGAGTGAAAAGACAAAGGAAAAGCACCAGGAACAACACAACATTCCCTTCCCCTGTTTATTGGCTGGAGGTTTATTAACATATAAGTCTCCTGCTACCTCACCCATTAGTAGTAATTCTCACAGGTCACTGGATGGTTTAAGCAGAACTCAGGGCGAAAGTATATCAGAACAAGGGTCAACTGACAATGAATCCTGCACAAATTCAGAGCTGAATTCTCCTCTGGTCAGGAGGACTTTACCTGTGTTACTTCTTTATAGTATCAAAGAATCTGATGAGAAAGCAGGAAAAATCTTTTCACAGATGAACAATATCATGAGTAAAAGTTTGCACGATGACGGTTTTACAGTTCCTCAGATTATTGAAATGGAGCTGGACAACCAGGAGCAGCTGTTGTTACAGGATCCGCCTGTGACTTACATCCAGCAGTTTGCAGATGCAGCCGCCAGCCTCACTTCTCCAGATTCCGAGAAGTGGAACTCTGTGTTCCCCAAGCCTGGGGCTTTGGTGCAGTGCTTGAGGCTACCAAAGTTTGCAGAGGAGGAGACTCTTTGTATAGACTCTATAACTCCTTGTGCTGATGGAATTCATTTGTTGGTAGGACTGCGGACATGCTCTGTGGAATCATTGAGTGCAATAAATCAAGTCGAGGCCTTGAATAATTTAAATAAATTAAACTCTGCACTATGTAATAGACGTAAAGGTGATCTGGAATCCAATCTTGCTGTAGTGAATGGTGCAAATATCAGTGTGATCCAACATGAGTCACCAGCAGATGTGCCGGAGCATCTGCTCATCCGGCCGGAGCAGAGGAATGTCGTCAGTGGTGGATATTTAGTTCTTTACAAGATGAACTATACCACTCGAATAGTGACTTTAGAAGAGGAGCCCGTGAAAATCCAACATATCAAAGATCCCCAGGACACAATTACCTCGCTCATTTTGCTTCCACCAGATATACTGGATAATCGAGAGGATGACTGTGAGGAACCTGCTGAGGAAATGCAGTTAGCCTCAAAGAATGGGATTGAAAGAGAAAAAAAGTCTGACATTTCTACGCTTGGACACCTGGTAGTAACCACTCAGGGAGGATACGTGAAAGTATTAGACCTTTCAAACTTCGAAATTTTGGCCAAAGTGGAGCCTCCCAAAAAGGAGGGCACTGAAGAACAGGATACATTTGTTTCTGTCATTTACTGCTCAGGCACAGACAGGCTGTGTGCGTGCACCAAAGGTGGTGAGCTTCATTTTCTCCAAATTGGAGGAACCTGTGATGATATTGATGAAGCTGATATTCTGGTAGATGGATCCCTTTCTAAAGGAATAGAACCAGCTCTAGAAGGTTCCAGACCTTTATCAAATCCTTCAAGTCCTGGTATTTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGCTCTAGAAGGTTCCAGAC
59.83
CCCACTGCAGTTTTTCTGGC
59.97
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGCTCTAGAAGGTTCCAGAC
59.83
CCACAATCTCCCACTGCAGT
59.96
151
PCR template sequence:
GAAGCTGATATTCTGGTAGATGGATCCCTTTCTAAAGGAATAGAACCAGCTCTAGAAGGTTCCAGACCTTTATCAAATCCTTCAAGTCCTGGTATTTCAGGGCATACATCACAGAAGGAAGCCATGGAAGTAAGCCTTGATATAACAGCTCTCAGCATTCTCCAGCAGCCAGAAAAACTGCAGTGGGAGATTGTGGCTAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
29
Interacting miRNAs (#binding sites)
mmu-miR-224-5p(2), mmu-miR-9-5p(1), mmu-miR-140-5p(1), mmu-let-7a-5p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-135a-5p(1), mmu-let-7c-5p(1), mmu-miR-146a-5p(1), mmu-miR-19a-3p(1), mmu-miR-217-5p(1), mmu-miR-138-5p(1), mmu-miR-214-3p(1), mmu-let-7d-5p(1), mmu-miR-136-5p(1), mmu-miR-434-5p(1), mmu-miR-433-3p(1), mmu-miR-351-5p(1), mmu-miR-125a-5p(1), mmu-miR-382-3p(1), mmu-miR-127-5p(1), mmu-miR-541-5p(1), mmu-miR-340-5p(1), mmu-miR-98-5p(1), mmu-miR-190b-5p(1), mmu-miR-670-5p(1), mmu-miR-3105-3p(1), mmu-miR-146b-5p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CCTGGTATTTCAGGGCATACATCACA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBIRC6_1548_ORF_1
1.067
0.103495695
0.999999996
3072
ORF sequence:
ATGGAAGTAAGCCTTGATATAACAGCTCTCAGCATTCTCCAGCAGCCAGAAAAACTGCAGTGGGAGATTGTGGCTAATGTGCTTGAAGATACTGTTAAGGATCTTGAAGAACTTGGGGCAAACCCCTCCCTAACGAACTCTAAGAGTGAAAAGACAAAGGAAAAGCACCAGGAACAACACAACATTCCCTTCCCCTGTTTATTGGCTGGAGGTTTATTAACATATAAGTCTCCTGCTACCTCACCCATTAGTAGTAATTCTCACAGGTCACTGGATGGTTTAAGCAGAACTCAGGGCGAAAGTATATCAGAACAAGGGTCAACTGACAATGAATCCTGCACAAATTCAGAGCTGAATTCTCCTCTGGTCAGGAGGACTTTACCTGTGTTACTTCTTTATAGTATCAAAGAATCTGATGAGAAAGCAGGAAAAATCTTTTCACAGATGAACAATATCATGAGTAAAAGTTTGCACGATGACGGTTTTACAGTTCCTCAGATTATTGAAATGGAGCTGGACAACCAGGAGCAGCTGTTGTTACAGGATCCGCCTGTGACTTACATCCAGCAGTTTGCAGATGCAGCCGCCAGCCTCACTTCTCCAGATTCCGAGAAGTGGAACTCTGTGTTCCCCAAGCCTGGGGCTTTGGTGCAGTGCTTGAGGCTACCAAAGTTTGCAGAGGAGGAGACTCTTTGTATAGACTCTATAACTCCTTGTGCTGATGGAATTCATTTGTTGGTAGGACTGCGGACATGCTCTGTGGAATCATTGAGTGCAATAAATCAAGTCGAGGCCTTGAATAATTTAAATAAATTAAACTCTGCACTATGTAATAGACGTAAAGGTGATCTGGAATCCAATCTTGCTGTAGTGAATGGTGCAAATATCAGTGTGATCCAACATGAGTCACCAGCAGATGTGCCGGAGCATCTGCTCATCCGGCCGGAGCAGAGGAATGTCGTCAGTGGTGGATATTTAGTTCTTTACAAGATGAACTATACCACTCGAATAGTGACTTTAGAAGAGGAGCCCGTGAAAATCCAACATATCAAAGATCCCCAGGACACAATTACCTCGCTCATTTTGCTTCCACCAGATATACTGGATAATCGAGAGGATGACTGTGAGGAACCTGCTGAGGAAATGCAGTTAGCCTCAAAGAATGGGATTGAAAGAGAAAAAAAGTCTGACATTTCTACGCTTGGACACCTGGTAGTAACCACTCAGGGAGGATACGTGAAAGTATTAGACCTTTCAAACTTCGAAATTTTGGCCAAAGTGGAGCCTCCCAAAAAGGAGGGCACTGAAGAACAGGATACATTTGTTTCTGTCATTTACTGCTCAGGCACAGACAGGCTGTGTGCGTGCACCAAAGGTGGTGAGCTTCATTTTCTCCAAATTGGAGGAACCTGTGATGATATTGATGAAGCTGATATTCTGGTAGATGGATCCCTTTCTAAAGGAATAGAACCAGCTCTAGAAGGTTCCAGACCTTTATCAAATCCTTCAAGTCCTGGTATTTCAGGGCATACATCACAGAAGGAAGCCATGGAAGTAAGCCTTGATATAACAGCTCTCAGCATTCTCCAGCAGCCAGAAAAACTGCAGTGGGAGATTGTGGCTAATGTGCTTGAAGATACTGTTAAGGATCTTGAAGAACTTGGGGCAAACCCCTCCCTAACGAACTCTAAGAGTGAAAAGACAAAGGAAAAGCACCAGGAACAACACAACATTCCCTTCCCCTGTTTATTGGCTGGAGGTTTATTAACATATAAGTCTCCTGCTACCTCACCCATTAGTAGTAATTCTCACAGGTCACTGGATGGTTTAAGCAGAACTCAGGGCGAAAGTATATCAGAACAAGGGTCAACTGACAATGAATCCTGCACAAATTCAGAGCTGAATTCTCCTCTGGTCAGGAGGACTTTACCTGTGTTACTTCTTTATAGTATCAAAGAATCTGATGAGAAAGCAGGAAAAATCTTTTCACAGATGAACAATATCATGAGTAAAAGTTTGCACGATGACGGTTTTACAGTTCCTCAGATTATTGAAATGGAGCTGGACAACCAGGAGCAGCTGTTGTTACAGGATCCGCCTGTGACTTACATCCAGCAGTTTGCAGATGCAGCCGCCAGCCTCACTTCTCCAGATTCCGAGAAGTGGAACTCTGTGTTCCCCAAGCCTGGGGCTTTGGTGCAGTGCTTGAGGCTACCAAAGTTTGCAGAGGAGGAGACTCTTTGTATAGACTCTATAACTCCTTGTGCTGATGGAATTCATTTGTTGGTAGGACTGCGGACATGCTCTGTGGAATCATTGAGTGCAATAAATCAAGTCGAGGCCTTGAATAATTTAAATAAATTAAACTCTGCACTATGTAATAGACGTAAAGGTGATCTGGAATCCAATCTTGCTGTAGTGAATGGTGCAAATATCAGTGTGATCCAACATGAGTCACCAGCAGATGTGCCGGAGCATCTGCTCATCCGGCCGGAGCAGAGGAATGTCGTCAGTGGTGGATATTTAGTTCTTTACAAGATGAACTATACCACTCGAATAGTGACTTTAGAAGAGGAGCCCGTGAAAATCCAACATATCAAAGATCCCCAGGACACAATTACCTCGCTCATTTTGCTTCCACCAGATATACTGGATAATCGAGAGGATGACTGTGAGGAACCTGCTGAGGAAATGCAGTTAGCCTCAAAGAATGGGATTGAAAGAGAAAAAAAGTCTGACATTTCTACGCTTGGACACCTGGTAGTAACCACTCAGGGAGGATACGTGAAAGTATTAGACCTTTCAAACTTCGAAATTTTGGCCAAAGTGGAGCCTCCCAAAAAGGAGGGCACTGAAGAACAGGATACATTTGTTTCTGTCATTTACTGCTCAGGCACAGACAGGCTGTGTGCGTGCACCAAAGGTGGTGAGCTTCATTTTCTCCAAATTGGAGGAACCTGTGATGATATTGATGAAGCTGATATTCTGGTAGATGGATCCCTTTCTAAAGGAATAGAACCAGCTCTAGAAGGTTCCAGACCTTTATCAAATCCTTCAAGTCCTGGTATTTCA
Peptide sequence:
MEVSLDITALSILQQPEKLQWEIVANVLEDTVKDLEELGANPSLTNSKSEKTKEKHQEQHNIPFPCLLAGGLLTYKSPATSPISSNSHRSLDGLSRTQGESISEQGSTDNESCTNSELNSPLVRRTLPVLLLYSIKESDEKAGKIFSQMNNIMSKSLHDDGFTVPQIIEMELDNQEQLLLQDPPVTYIQQFADAAASLTSPDSEKWNSVFPKPGALVQCLRLPKFAEEETLCIDSITPCADGIHLLVGLRTCSVESLSAINQVEALNNLNKLNSALCNRRKGDLESNLAVVNGANISVIQHESPADVPEHLLIRPEQRNVVSGGYLVLYKMNYTTRIVTLEEEPVKIQHIKDPQDTITSLILLPPDILDNREDDCEEPAEEMQLASKNGIEREKKSDISTLGHLVVTTQGGYVKVLDLSNFEILAKVEPPKKEGTEEQDTFVSVIYCSGTDRLCACTKGGELHFLQIGGTCDDIDEADILVDGSLSKGIEPALEGSRPLSNPSSPGISGHTSQKEAMEVSLDITALSILQQPEKLQWEIVANVLEDTVKDLEELGANPSLTNSKSEKTKEKHQEQHNIPFPCLLAGGLLTYKSPATSPISSNSHRSLDGLSRTQGESISEQGSTDNESCTNSELNSPLVRRTLPVLLLYSIKESDEKAGKIFSQMNNIMSKSLHDDGFTVPQIIEMELDNQEQLLLQDPPVTYIQQFADAAASLTSPDSEKWNSVFPKPGALVQCLRLPKFAEEETLCIDSITPCADGIHLLVGLRTCSVESLSAINQVEALNNLNKLNSALCNRRKGDLESNLAVVNGANISVIQHESPADVPEHLLIRPEQRNVVSGGYLVLYKMNYTTRIVTLEEEPVKIQHIKDPQDTITSLILLPPDILDNREDDCEEPAEEMQLASKNGIEREKKSDISTLGHLVVTTQGGYVKVLDLSNFEILAKVEPPKKEGTEEQDTFVSVIYCSGTDRLCACTKGGELHFLQIGGTCDDIDEADILVDGSLSKGIEPALEGSRPLSNPSSPGIS
IRESfinder result
IRESfinder score
0.713443539
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page