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mmu_circBclaf1_842
Basic information of circular RNA
PanCircBase ID:
mmu_circBclaf1_842
mm39_Chr. Position ID:
chr10|20203847|20215878|+
Gene name:
Bclaf1
Transcript:
ENSMUST00000191438.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
4,5,6,7,8,9
Exon/intron offsets:
0,1208,3984,5290,11607,11950
Genomic length:
12031
Exon/intron sizes in nt:
106,85,176,181,213,81
Flanking exon/introns:
chr10:20201845-20203847|chr10:20215878-20219803
Splice length:
842
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
AACAATACTTCAAATCACCTGCAGTGACCCTAAACGAGCGGTTCACTTCATACCAGAAAGCTACTGAAGAACATAGTACCCGGCAAAAGAGCCCCGAGATACACAGGAGGATTGACATCTCTCCCAGCGCTCTGAGGAAGCACACCCGGCTAGCAGGAGAGGAGAGAGGTTTTAAAGAAGAAATTCAGAAGGGAGATAAAAAGTTAAGGTGTGATTCGGCTGACCTTCGGCACGACATTGACCGTCGCCGTAAAGAGAGAAGTAAAGAGCGGGGAGATTCCAAGGGCTCCAGGGAGTCCAGTGGGTCCAGAAAGCAAGAAAAAACACCAAAGGATTACAAGGAGTATAAACCTTACAAAGATGACAGCAAACATAAAGGTAGAGAGCGGGACCATTCCCGGTCATCGTCCTCGTCAGCATCGCCGTCCTCGCCCAGTTCTCGAGAAGAAAAAGAGAGTAAGAAAGAGAGAGAAGAAGAATTTAAAACTCACCACGAGATGAAAGACTACTCAGGATTTGCAGGAGTTAGCAGACCACGAGGAACCTTTCACGATGACAGAGATGATGGTGTGGATTACTGGGCCAAAAGAGGAAGAGGTCGTGGTACTTTTCAACGTGGCAGAGGGCGCTTTAATTTCAAAAAATCAGGTAGCAGTCCAAAATGGACTCATGACAAATACCAAGGAGATGGGATTGTTGAAGATGACGAAGAGACCATGGAAAATAATGAAGAGAAGAAGGACAGACGCAAAGAAGAAAAGGAATAGTCTCAAGATTGCAACAGGGAGCAGAACTTGACACTTACATTTTTTTAAACCTGATTTTTGTTTTCAAATAAGAAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCAACAGGGAGCAGAACTT
59.82
GGCTCTTTTGCCGGGTACTA
59.75
159
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTGCAACAGGGAGCAGAACT
59.82
GGCTCTTTTGCCGGGTACTA
59.75
160
PCR template sequence:
CAGACGCAAAGAAGAAAAGGAATAGTCTCAAGATTGCAACAGGGAGCAGAACTTGACACTTACATTTTTTTAAACCTGATTTTTGTTTTCAAATAAGAATAACAATACTTCAAATCACCTGCAGTGACCCTAAACGAGCGGTTCACTTCATACCAGAAAGCTACTGAAGAACATAGTACCCGGCAAAAGAGCCCCGAGAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-185-5p(1), mmu-miR-129-5p(1), mmu-miR-335-3p(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
TTCAAATAAGAATAACAATACTTCAA
siRNA sets
TTGAAGTATTGTTATTCTT, TATTGTTATTCTTATTTGA, GTATTGTTATTCTTATTTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.467854512
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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