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mmu_circBcl7a_347
Basic information of circular RNA
PanCircBase ID:
mmu_circBcl7a_347
mm39_Chr. Position ID:
chr5|123489929|123499421|+
Gene name:
Bcl7a
Transcript:
ENSMUST00000120593.5
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
4,5,6
Exon/intron offsets:
0,4074,9324
Genomic length:
9492
Exon/intron sizes in nt:
82,97,168
Flanking exon/introns:
chr5:123485780-123489929|chr5:123499421-123507395
Splice length:
347
Other database IDs:
circBase: mmu_circ_0012099, CIRCpedia: MMU_CIRCpedia_6020, circAtlas: mmu-Bcl7a_0001
circBase: hsa_circ_0000452, circAtlas: hsa-BCL7A_0001, CIRCpedia: HSA_CIRCpedia_7258
Human Ortholog IDs:
Mature spliced Sequence:
GGAGAAGAAATGGGTGACCGTTGGCGATACATCCCTACGAATCTACAAGTGGGTCCCTGTGACGGAGCCAAAGGTTGATGATAAAAACAAGAACAAGAAGAAAGGCAAGGACGAGAAGTGTGGCTCGGAGGTGACCACTCCAGAGAACAGCTCGTCTCCTGGGATGATGGACATGCACGATGATAACAGCAACCAGAGCTCCATAGCAGACGCCTCCCCCATCAAGCAAGAGAACAGCAGCAACTCCAGCCCTGCCCCAGAGACCAACCCACCCGTGCCCAGCGATGGCACCGAAGCCAAGGCTGATGAGGCGCAGGCCGATGGAAAAGAGCACCCTGGAGCTGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAGACCAACCCACCCGTG
59.97
ATCAACCTTTGGCTCCGTCA
59.6
167
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GAGACCAACCCACCCGTG
59.97
TCATCAACCTTTGGCTCCGT
59.6
169
PCR template sequence:
AGCCCTGCCCCAGAGACCAACCCACCCGTGCCCAGCGATGGCACCGAAGCCAAGGCTGATGAGGCGCAGGCCGATGGAAAAGAGCACCCTGGAGCTGAAGGGAGAAGAAATGGGTGACCGTTGGCGATACATCCCTACGAATCTACAAGTGGGTCCCTGTGACGGAGCCAAAGGTTGATGATAAAAACAAGAACAAGAAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
CCTGGAGCTGAAGGGAGAAGAAATGG
siRNA sets
TTTCTTCTCCCTTCAGCTC,ATTTCTTCTCCCTTCAGCT,TTCTTCTCCCTTCAGCTCC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBCL7A_347_ORF_1
1.2638
0.495075794
0.637727374
201
ORF sequence:
ATGATGGACATGCACGATGATAACAGCAACCAGAGCTCCATAGCAGACGCCTCCCCCATCAAGCAAGAGAACAGCAGCAACTCCAGCCCTGCCCCAGAGACCAACCCACCCGTGCCCAGCGATGGCACCGAAGCCAAGGCTGATGAGGCGCAGGCCGATGGAAAAGAGCACCCTGGAGCTGAAGGGAGAAGAAATGGGTGA
Peptide sequence:
MMDMHDDNSNQSSIADASPIKQENSSNSSPAPETNPPVPSDGTEAKADEAQADGKEHPGAEGRRNG
IRESfinder result
IRESfinder score
0.201971563
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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