top of page

mmu_circBcl7a_347

Basic information of circular RNA
PanCircBase ID:

mmu_circBcl7a_347

mm39_Chr. Position ID:

chr5|123489929|123499421|+

Gene name:

Bcl7a

Transcript:

ENSMUST00000120593.5

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

3

Exon/intron indexes:

4,5,6

Exon/intron offsets:

0,4074,9324

Genomic length:

9492

Exon/intron sizes in nt:

82,97,168

Flanking exon/introns:

chr5:123485780-123489929|chr5:123499421-123507395

Splice length:

347

Other database IDs:

circBase: mmu_circ_0012099, CIRCpedia: MMU_CIRCpedia_6020, circAtlas: mmu-Bcl7a_0001

circBase: hsa_circ_0000452, circAtlas: hsa-BCL7A_0001, CIRCpedia: HSA_CIRCpedia_7258

Human Ortholog IDs:
Mature spliced Sequence:

GGAGAAGAAATGGGTGACCGTTGGCGATACATCCCTACGAATCTACAAGTGGGTCCCTGTGACGGAGCCAAAGGTTGATGATAAAAACAAGAACAAGAAGAAAGGCAAGGACGAGAAGTGTGGCTCGGAGGTGACCACTCCAGAGAACAGCTCGTCTCCTGGGATGATGGACATGCACGATGATAACAGCAACCAGAGCTCCATAGCAGACGCCTCCCCCATCAAGCAAGAGAACAGCAGCAACTCCAGCCCTGCCCCAGAGACCAACCCACCCGTGCCCAGCGATGGCACCGAAGCCAAGGCTGATGAGGCGCAGGCCGATGGAAAAGAGCACCCTGGAGCTGAAG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

GAGACCAACCCACCCGTG

59.97

ATCAACCTTTGGCTCCGTCA

59.6

167

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

GAGACCAACCCACCCGTG

59.97

TCATCAACCTTTGGCTCCGT

59.6

169

PCR template sequence:

AGCCCTGCCCCAGAGACCAACCCACCCGTGCCCAGCGATGGCACCGAAGCCAAGGCTGATGAGGCGCAGGCCGATGGAAAAGAGCACCCTGGAGCTGAAGGGAGAAGAAATGGGTGACCGTTGGCGATACATCCCTACGAATCTACAAGTGGGTCCCTGTGACGGAGCCAAAGGTTGATGATAAAAACAAGAACAAGAAG

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

NA

Interacting miRNAs (#binding sites)

NA

siRNAs for circular RNA silencing
Junction sequence

CCTGGAGCTGAAGGGAGAAGAAATGG

siRNA sets

TTTCTTCTCCCTTCAGCTC,ATTTCTTCTCCCTTCAGCT,TTCTTCTCCCTTCAGCTCC

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCBCL7A_347_ORF_1

1.2638

0.495075794

0.637727374

201

ORF sequence:

ATGATGGACATGCACGATGATAACAGCAACCAGAGCTCCATAGCAGACGCCTCCCCCATCAAGCAAGAGAACAGCAGCAACTCCAGCCCTGCCCCAGAGACCAACCCACCCGTGCCCAGCGATGGCACCGAAGCCAAGGCTGATGAGGCGCAGGCCGATGGAAAAGAGCACCCTGGAGCTGAAGGGAGAAGAAATGGGTGA

Peptide sequence:

MMDMHDDNSNQSSIADASPIKQENSSNSSPAPETNPPVPSDGTEAKADEAQADGKEHPGAEGRRNG

IRESfinder result

IRESfinder score

0.201971563

IRES/non IRES

non-IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

logo.png

Institute of Life sciences, Bhubaneswar, India

bottom of page