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mmu_circBcat2_279
Basic information of circular RNA
PanCircBase ID:
mmu_circBcat2_279
mm39_Chr. Position ID:
chr7|45224854|45225426|+
Gene name:
Bcat2
Transcript:
ENSMUST00000033098.16
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
2,3
Exon/intron offsets:
0,368
Genomic length:
572
Exon/intron sizes in nt:
75,204
Flanking exon/introns:
chr7:45219823-45224854|chr7:45225426-45234340
Splice length:
279
Other database IDs:
circAtlas: mmu-Bcat2_0004
Human Ortholog IDs:
Mature spliced Sequence:
GTCTGGGCCCGAAAGCTTCTGCCTGTTCCCTGGCTTCTATGTGGGTCCAAAAGATGTGTGTCCTCCATATTCAAGGCTGCAGACCTCCAGATTCAGATGACCAAAGAACCACAGAAGAAGCCAGCCCCTAGCCAGGCACTGCTGTTTGGGAAGACCTTCACAGACCACATGCTGATGGTGGAGTGGAATAACAAGGCTGGATGGGGCCCACCAAGGATCCAGCCCTTCCAGAACCTCACGCTACACCCAGCCTGCTCTGGTCTGCACTACTCTCTGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATAACAAGGCTGGATGGGGC
60.11
GGAGGTCTGCAGCCTTGAAT
60.03
180
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAAGGATCCAGCCCTTCCAG
60.11
GGAGGTCTGCAGCCTTGAAT
60.03
156
PCR template sequence:
GGAGTGGAATAACAAGGCTGGATGGGGCCCACCAAGGATCCAGCCCTTCCAGAACCTCACGCTACACCCAGCCTGCTCTGGTCTGCACTACTCTCTGCAGGTCTGGGCCCGAAAGCTTCTGCCTGTTCCCTGGCTTCTATGTGGGTCCAAAAGATGTGTGTCCTCCATATTCAAGGCTGCAGACCTCCAGATTCAGATGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-29b-1-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTACTCTCTGCAGGTCTGGGCCCGAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBCAT2_279_ORF_1
1.125
0.268365267
0.780248412
462
ORF sequence:
ATGACCAAAGAACCACAGAAGAAGCCAGCCCCTAGCCAGGCACTGCTGTTTGGGAAGACCTTCACAGACCACATGCTGATGGTGGAGTGGAATAACAAGGCTGGATGGGGCCCACCAAGGATCCAGCCCTTCCAGAACCTCACGCTACACCCAGCCTGCTCTGGTCTGCACTACTCTCTGCAGGTCTGGGCCCGAAAGCTTCTGCCTGTTCCCTGGCTTCTATGTGGGTCCAAAAGATGTGTGTCCTCCATATTCAAGGCTGCAGACCTCCAGATTCAGATGACCAAAGAACCACAGAAGAAGCCAGCCCCTAGCCAGGCACTGCTGTTTGGGAAGACCTTCACAGACCACATGCTGATGGTGGAGTGGAATAACAAGGCTGGATGGGGCCCACCAAGGATCCAGCCCTTCCAGAACCTCACGCTACACCCAGCCTGCTCTGGTCTGCACTACTCTCTGCAG
Peptide sequence:
MTKEPQKKPAPSQALLFGKTFTDHMLMVEWNNKAGWGPPRIQPFQNLTLHPACSGLHYSLQVWARKLLPVPWLLCGSKRCVSSIFKAADLQIQMTKEPQKKPAPSQALLFGKTFTDHMLMVEWNNKAGWGPPRIQPFQNLTLHPACSGLHYSLQ
IRESfinder result
IRESfinder score
0.506069912
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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