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mmu_circBbx_237
Basic information of circular RNA
PanCircBase ID:
mmu_circBbx_237
mm39_Chr. Position ID:
chr16|50061216|50071757|-
Gene name:
Bbx
Transcript:
ENSMUST00000138166.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
10,9,8
Exon/intron offsets:
0,6928,10460
Genomic length:
10541
Exon/intron sizes in nt:
81,75,81
Flanking exon/introns:
chr16:50045656-50061216|chr16:50071757-50082778
Splice length:
237
Other database IDs:
CIRCpedia: MMU_CIRCpedia_38437, circAtlas: mmu-Bbx_0009
circAtlas: hsa-BBX_0006, CIRCpedia: HSA_CIRCpedia_42914
Human Ortholog IDs:
Mature spliced Sequence:
GCATCCTCTGGGACTTGCAGGCCTGATATTTCAGAATCACCTGAGTTGCGTCAGAAGTCACCATTGTTTCAGTTTGCCGAGATATCTTCAAGGACATCGCACCCCGATGCGCCTTCAAAACAGTGTCAAGCGTCAGCCTTGTTTCAGTTTGCAGAGATCTCTTCAAGCACTTCGCAGTTGGGTGGCACTGAGCCTGTGAAACGCTGTGGAAATTCTGCACTCTTTCAACTGGCAGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCTCTTCAAGCACTTCGCAGT
59.93
TGGTGACTTCTGACGCAACT
59.54
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTCAAGCACTTCGCAGTTGG
59.34
ATGGTGACTTCTGACGCAACT
59.93
140
PCR template sequence:
CTTGTTTCAGTTTGCAGAGATCTCTTCAAGCACTTCGCAGTTGGGTGGCACTGAGCCTGTGAAACGCTGTGGAAATTCTGCACTCTTTCAACTGGCAGAGGCATCCTCTGGGACTTGCAGGCCTGATATTTCAGAATCACCTGAGTTGCGTCAGAAGTCACCATTGTTTCAGTTTGCCGAGATATCTTCAAGGACATCGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-18a-5p(1), mmu-miR-24-3p(1), mmu-miR-342-5p(1), mmu-miR-484(1)
siRNAs for circular RNA silencing
Junction sequence
TCAACTGGCAGAGGCATCCTCTGGGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.81297862
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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