top of page
mmu_circBbs7_426
Basic information of circular RNA
PanCircBase ID:
mmu_circBbs7_426
mm39_Chr. Position ID:
chr3|36661669|36664777|-
Gene name:
Bbs7
Transcript:
ENSMUST00000040148.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
5,4,3
Exon/intron offsets:
0,2659,3041
Genomic length:
3108
Exon/intron sizes in nt:
187,172,67
Flanking exon/introns:
chr3:36659905-36661669|chr3:36664777-36666160
Splice length:
426
Other database IDs:
circAtlas: mmu-Bbs7_0033
Human Ortholog IDs:
Mature spliced Sequence:
GTGGTTGTTGGAGATCAAGATGGGGTAGTGATATGCTTCGGCGTGAAGAAAGGAGAAGCTGTGGTGATGTTCAAGACTTTACCAGGGCAGAAGATCTCGAGGCTGGAACTAGGAGGGGCCGTCAACACGCCTCAGGAGAAAATCTTCATTGCTGCAGGGTCCGAGATTAGAGGCTTTACAAAGAGAGGGAAACAGTTTCTCTCTTTTGAAACTAACCTCACGGAAAGCATTAAAGCTATGTACATATCTGGCTCTGACCTCTTCCTCAGTGCAAGCTACATCTATAATCACTACTGTGATTGCAAAGACCAAAATTATTACCTTTCTGGGGACAAAATCAATGATGTCATCTGCCTTCCTGTGGAAAAGTTATCTCGCGTGACACCGGTGTTGGCCTGCCAGGACCGGGTGCTCCGAGTCTTACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGTTATCTCGCGTGACACCG
60.18
TCGAGATCTTCTGCCCTGGT
60.32
159
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTCATCTGCCTTCCTGTGG
59.67
GCTTCTCCTTTCTTCACGCC
59.2
141
PCR template sequence:
TGGGGACAAAATCAATGATGTCATCTGCCTTCCTGTGGAAAAGTTATCTCGCGTGACACCGGTGTTGGCCTGCCAGGACCGGGTGCTCCGAGTCTTACAGGTGGTTGTTGGAGATCAAGATGGGGTAGTGATATGCTTCGGCGTGAAGAAAGGAGAAGCTGTGGTGATGTTCAAGACTTTACCAGGGCAGAAGATCTCGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-155-5p(1), mmu-miR-499-5p(1), mmu-miR-207(1), mmu-miR-540-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CCGAGTCTTACAGGTGGTTGTTGGAG
siRNA sets
AACCACCTGTAAGACTCGG,CAACCACCTGTAAGACTCG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBBS7_426_ORF_1
0.9698
0.205947544
0.954976856
786
ORF sequence:
ATGTTCAAGACTTTACCAGGGCAGAAGATCTCGAGGCTGGAACTAGGAGGGGCCGTCAACACGCCTCAGGAGAAAATCTTCATTGCTGCAGGGTCCGAGATTAGAGGCTTTACAAAGAGAGGGAAACAGTTTCTCTCTTTTGAAACTAACCTCACGGAAAGCATTAAAGCTATGTACATATCTGGCTCTGACCTCTTCCTCAGTGCAAGCTACATCTATAATCACTACTGTGATTGCAAAGACCAAAATTATTACCTTTCTGGGGACAAAATCAATGATGTCATCTGCCTTCCTGTGGAAAAGTTATCTCGCGTGACACCGGTGTTGGCCTGCCAGGACCGGGTGCTCCGAGTCTTACAGGTGGTTGTTGGAGATCAAGATGGGGTAGTGATATGCTTCGGCGTGAAGAAAGGAGAAGCTGTGGTGATGTTCAAGACTTTACCAGGGCAGAAGATCTCGAGGCTGGAACTAGGAGGGGCCGTCAACACGCCTCAGGAGAAAATCTTCATTGCTGCAGGGTCCGAGATTAGAGGCTTTACAAAGAGAGGGAAACAGTTTCTCTCTTTTGAAACTAACCTCACGGAAAGCATTAAAGCTATGTACATATCTGGCTCTGACCTCTTCCTCAGTGCAAGCTACATCTATAATCACTACTGTGATTGCAAAGACCAAAATTATTACCTTTCTGGGGACAAAATCAATGATGTCATCTGCCTTCCTGTGGAAAAGTTATCTCGCGTGACACCGGTGTTGGCCTGCCAGGACCGGGTGCTCCGAGTCTTACAG
Peptide sequence:
MFKTLPGQKISRLELGGAVNTPQEKIFIAAGSEIRGFTKRGKQFLSFETNLTESIKAMYISGSDLFLSASYIYNHYCDCKDQNYYLSGDKINDVICLPVEKLSRVTPVLACQDRVLRVLQVVVGDQDGVVICFGVKKGEAVVMFKTLPGQKISRLELGGAVNTPQEKIFIAAGSEIRGFTKRGKQFLSFETNLTESIKAMYISGSDLFLSASYIYNHYCDCKDQNYYLSGDKINDVICLPVEKLSRVTPVLACQDRVLRVLQ
IRESfinder result
IRESfinder score
0.604648778
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page