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mmu_circBbs7_377
Basic information of circular RNA
PanCircBase ID:
mmu_circBbs7_377
mm39_Chr. Position ID:
chr3|36658554|36661856|-
Gene name:
Bbs7
Transcript:
ENSMUST00000040148.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
7,6,5
Exon/intron offsets:
0,1278,3115
Genomic length:
3302
Exon/intron sizes in nt:
1,17,73,187
Flanking exon/introns:
chr3:36657108-36658554|chr3:36661856-36664328
Splice length:
377
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTACATATCTGGCTCTGACCTCTTCCTCAGTGCAAGCTACATCTATAATCACTACTGTGATTGCAAAGACCAAAATTATTACCTTTCTGGGGACAAAATCAATGATGTCATCTGCCTTCCTGTGGAAAAGTTATCTCGCGTGACACCGGTGTTGGCCTGCCAGGACCGGGTGCTCCGAGTCTTACAGGGATCTGATGTGATGTATGAAATTGAGGTTCCTGGTCCACCCACCGTCTTAGCACTGCATAATGGAGATGGAGGTGACTCTGGAGAAGGACTTCTGTTCGGCACATCAGATGGAAGACTTGGGCTTATTCAGATCACAACATCCAAACCAATACACAAATGGGAAATTCGAAATGACAAAAAGCGGGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGTTCGGCACATCAGATGGA
59.39
AGATGTAGCTTGCACTGAGGA
58.82
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTTCGGCACATCAGATGGA
59.39
AGATGTAGCTTGCACTGAGGAA
59.43
140
PCR template sequence:
CTTCTGTTCGGCACATCAGATGGAAGACTTGGGCTTATTCAGATCACAACATCCAAACCAATACACAAATGGGAAATTCGAAATGACAAAAAGCGGGGAGGTACATATCTGGCTCTGACCTCTTCCTCAGTGCAAGCTACATCTATAATCACTACTGTGATTGCAAAGACCAAAATTATTACCTTTCTGGGGACAAAATC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-136-5p(1), mmu-miR-127-3p(1), mmu-miR-499-5p(1), mmu-miR-207(1), mmu-miR-540-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AAAAAGCGGGGAGGTACATATCTGGC
siRNA sets
AGATATGTACCTCCCCGCT, CCAGATATGTACCTCCCCG, CAGATATGTACCTCCCCGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBBS7_377_ORF_1
0.9531
0.041347832
0.268387597
321
ORF sequence:
ATGTATGAAATTGAGGTTCCTGGTCCACCCACCGTCTTAGCACTGCATAATGGAGATGGAGGTGACTCTGGAGAAGGACTTCTGTTCGGCACATCAGATGGAAGACTTGGGCTTATTCAGATCACAACATCCAAACCAATACACAAATGGGAAATTCGAAATGACAAAAAGCGGGGAGGTACATATCTGGCTCTGACCTCTTCCTCAGTGCAAGCTACATCTATAATCACTACTGTGATTGCAAAGACCAAAATTATTACCTTTCTGGGGACAAAATCAATGATGTCATCTGCCTTCCTGTGGAAAAGTTATCTCGCGTGA
Peptide sequence:
MYEIEVPGPPTVLALHNGDGGDSGEGLLFGTSDGRLGLIQITTSKPIHKWEIRNDKKRGGTYLALTSSSVQATSIITTVIAKTKIITFLGTKSMMSSAFLWKSYLA
IRESfinder result
IRESfinder score
0.534308042
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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