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mmu_circBbs2_276
Basic information of circular RNA
PanCircBase ID:
mmu_circBbs2_276
mm39_Chr. Position ID:
chr8|94808625|94809119|-
Gene name:
Bbs2
Transcript:
ENSMUST00000034206.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
9,8
Exon/intron offsets:
0,358
Genomic length:
494
Exon/intron sizes in nt:
1,40,136
Flanking exon/introns:
chr8:94807797-94808625|chr8:94809119-94813283
Splice length:
276
Other database IDs:
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
GTTGATGCTCGCAGTGACCGGACTGGAGAGGTCATATTTAAAGACAACTTCTCTTCTGCTGTTGCTGGTGTGGTAGAGGGAGATTACCGGATGGATGGCCACGTACAGTTAATCTGCTGCTCAGTGGATGGGGAAATCCGAGGCTACCTGCCAGGCACAGCTGAGATGAAGGGGAACCTCCTGGACACAAGTGTGGAGCAGGACCTGATCCGAGAGCTGAGTCAGAAAAAGCAGAACCTGTTGCTAGAACTTCGCAACTATGAGGAGAGCACCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCTGATCCGAGAGCTGAGT
60.03
ACACCAGCAACAGCAGAAGA
59.82
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCTGATCCGAGAGCTGAGT
60.03
TCTACCACACCAGCAACAGC
60.25
151
PCR template sequence:
CCTCCTGGACACAAGTGTGGAGCAGGACCTGATCCGAGAGCTGAGTCAGAAAAAGCAGAACCTGTTGCTAGAACTTCGCAACTATGAGGAGAGCACCAAGGTTGATGCTCGCAGTGACCGGACTGGAGAGGTCATATTTAAAGACAACTTCTCTTCTGCTGTTGCTGGTGTGGTAGAGGGAGATTACCGGATGGATGGCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-205-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-298-5p(1), mmu-miR-503-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GGAGAGCACCAAGGTTGATGCTCGCA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBBS2_276_ORF_1
1.1861
0.521793002
0.918116459
462
ORF sequence:
ATGGATGGCCACGTACAGTTAATCTGCTGCTCAGTGGATGGGGAAATCCGAGGCTACCTGCCAGGCACAGCTGAGATGAAGGGGAACCTCCTGGACACAAGTGTGGAGCAGGACCTGATCCGAGAGCTGAGTCAGAAAAAGCAGAACCTGTTGCTAGAACTTCGCAACTATGAGGAGAGCACCAAGGTTGATGCTCGCAGTGACCGGACTGGAGAGGTCATATTTAAAGACAACTTCTCTTCTGCTGTTGCTGGTGTGGTAGAGGGAGATTACCGGATGGATGGCCACGTACAGTTAATCTGCTGCTCAGTGGATGGGGAAATCCGAGGCTACCTGCCAGGCACAGCTGAGATGAAGGGGAACCTCCTGGACACAAGTGTGGAGCAGGACCTGATCCGAGAGCTGAGTCAGAAAAAGCAGAACCTGTTGCTAGAACTTCGCAACTATGAGGAGAGCACCAAG
Peptide sequence:
MDGHVQLICCSVDGEIRGYLPGTAEMKGNLLDTSVEQDLIRELSQKKQNLLLELRNYEESTKVDARSDRTGEVIFKDNFSSAVAGVVEGDYRMDGHVQLICCSVDGEIRGYLPGTAEMKGNLLDTSVEQDLIRELSQKKQNLLLELRNYEESTK
IRESfinder result
IRESfinder score
0.336644523
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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