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mmu_circBaz2b_3899
Basic information of circular RNA
PanCircBase ID:
mmu_circBaz2b_3899
mm39_Chr. Position ID:
chr2|59737259|59790449|-
Gene name:
Baz2b
Transcript:
ENSMUST00000112550.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
23
Exon/intron indexes:
31,30,29,28,27,26,25,24,23,22,21,20,19,18,17,16,15,14,13,12,11,10,9
Exon/intron offsets:
0,523,4766,5486,5813,6624,10438,11523,13379,15227,16625,17745,19104,25189,26755,28299,29770,35846,36022,41171,50714,51516,52905
Genomic length:
53190
Exon/intron sizes in nt:
1,36,31,11,61,15,62,77,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr2:59733649-59737259|chr2:59790449-59792364
Splice length:
3899
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
AATCAGATAGTAATTCACAATCAGATTCAGAAGGCTCAGAAGACGACGAGGAGAAAGACCAGGAGGAATCAGATAGTGACACTGAAGGCGAGAAACCTGCCGTGAACCTGACCCAGACAAGCTCCTCTGCCAAAAGCCCTCCCTCCAGTCTCACAGCGCACTCAGCACCTCACCTCCACATAGGAAGCCCCCCAGGCTCTGCTCCTGCTGCCCTGTGCTCTGAGTCCCAGCCTCCTGCTTTTCTTGGCACTTCTTCTTCCACACTCACTTCAACTCCACACTCTGGTACATCCAAACGAAGAAGAGTGGCAGACGATCAGGAGCTGCGCATCCCTCTGGACTATGGCTGGCAGAGGGAGACAAGGGTGAGAAACTTTGGTGGGCGCCTTCCAGGAGAAGTTGCATATTATGCCCCGTGTGGGAAGAAGCTGAGGCAGTGCCCTGACATGGTAAAGGGAATGCAGTGGTGTCTTTTGAAAGAAGAGGATGTCATTCCTCGTATCAGGGCAATGGACGGCCGAAGAGGAAGACCACCCAATCCAGATAGACCCAGAGCAAGAGAGGAATCCAGGATGAAACGCCGGAAGGGTCGCCCTCCCAATGTTGGCAGTGCAGAATTCCTAGATAACACAGATGCAAAATTACTAAGGAAACTGCAGGCTCAAGAAATAGCCAGACAAGCAGCACAAATAAAACTTTTGAGAAAACTTCAGAAGCAGGAACAGGCACGGGTTGCCAAAGAAGCTAAAAAACAGCAAGCGATAATGGCTGCGGAAGAGAAGCGCAAACAGAAAGAACAGATGAAGATTATAAAGCAGCAGGAAAAAATTAAGAGAATACAGCAAATCAGAATGGAGAAAGAACTGAGAGCTCAGCAGATTCTCGAGGCTAAAAAGAAAAAGAAGGAAGAAGCGGCAAATGCCAAATTATTGGAGGCCGAGAAACGAACCAAGGAGAAAGAACTGAGAAGACAGCAGGCTGTCCTTCTGAAACACCAGGAACGGGAGCGAAGGCGGCAGCATGTGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAAGCAGAAGAAAAAGAACGATTGAAGCAAGAGAAACGTGATGAGAAAAGATTGAATAAGGAACGCAAACTAGAGCAGCGGAGACTGGAGTTAGAAATGGCGAAGGAGCTAAAGAAACCTAAGGAAGACATGTGCTTAGCAGACCAAAAGCCCTTGCCAGAGTGGCCTCGCATCCCGGGACTTGTGCTCTCTGGAACCACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTGGTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTCAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATTACAGGATACAAGGCAAAAACAGCTCTGGGAGAACATTTGCTGAACGTTGGTGTGAATCGAGACAATGTGTCCGAGGTTTTGCAGATTTTCATGGAGGCCCACTGTGGGCAGACTGAGCTGACTGAGAGCCTGAAGACTAAAGCTTTCCAGGCTCACACTCCAGCACAGAAAGCGTCCATCCTGGCCTTCCTCGTTAACGAGCTGGCATGCAGCAAGAGTGTGGTGAGTGAGATTGACAAGAACATTGAATACATGTCTAACTTGAGAAGAGATAAATGGATGGTGGAAGGTAAACTCCGCAAGCTTAGGATAATTCATGCTAAGAAAACAGGCAAGAGAGACGCCTCAGGGGGCATTGACCTCGGGGAAGAACAACACCCCTTGGGCACGCCCACGCCAGGACGCAAGCGGAGAAGGAAGGGAGGGGACAGTGATTATGACGATGATGACGATGATGACAGCGACGACCAAGCTGATGAGGATGAGGAAGATGAGGAAGATAAAGATGACAAAAAAGGAAAGAAGACCGATATCTGTGAAGATGAGGATGAAGGTGACCAAACAGCCAGCGTTGAGGAGCTAGAAAAACAGATTGAAAAACTGAGCAAACAACAGAGCCAGTACAGACGAAAGCTCTTTGATGCTTCTCACTCACTACGCTCGATGATGTTTGGTCAGGATCGGTACCGACGCAGATACTGGATTCTCCCTCAATGTGGAGGGATTTTTGTAGAAGGCATGGAAAGTGGTGAAGGCCTAGAAGAAATTGCAAAAGAAAAAGAAAAGCTTAAAAAGGCAGAGAGTCTCCAGATCAAAGAAGAAGTATTTGAGACTTCTGCGGAGACATTAAACTGTTCCATTAGAGATCACTGCGAGCAGAAAGACGACCCAAAAGAGAAAGATAACACAAATCTATTTCTTCAGAAACCAGGCTCTTTCTCCAAGTTAAGCAAGCTTTTAGAGGTAGCTAAAATGCCTCCTGAGTCAGATGTTATGACCCCCCCAAAAGTGAATGTTAGTACAAACGGGGGCCCACTGTCTCATCAGAACAGCGGGAAGCATCCACTGGGGAGCGTTCCCTCAGCAACAACAGCACAAAGCCCCGTGGGAAAGACAGACGCCAGTCTCTTTAGCTCAGGCTCCGGCAGTTGTGGGAAGTTCTACAGTCCTCTCCCCAATGACCAGCTGTTAAAAACACTGACTGAAAAGAACAGACAGTGGTTTAGCCTTTTGCCAAAAACACCTTGCGATGACACGTCCCTGACCCACGCTGACCTGTCCACCACTCTGGTGACTCCTCAGTCTCAGCCACCATCTAAGTCACCTTCGCCGGCCCCAGCTGCACTGCTCGGACCCTCTTCTGTTCAGAGCCCCCCTGGACTGAACCCGTTTGCTCTGTCGCCTCTTCAGGTGAAAGGTGGTGTGTCTATGATGGGACTTCAGTTCTGTGGGTGGCCTGCTGGAGTGCTCGCTTCCAACGTCCCATTTACATCACCTTTGCCTGCTCTCGGCTCAGGGTTGGGACTGCCAGAAGGAAATGGCAGTAGTTCATTCTTGACTTCCAGTGTTGCTTCAAGTAAAAGTGACTCTCCAGTCCCTCCAGCTGAAAGACCCTCCAGCGCTCAGCCAGTGGCTGTTGAAGTAGCAAAGCCAGTAGATTTTCCTAGTCCCAAACCTATCCCAGAAGAAATGCAGTTCGGATGGTGGAGAATCATTGACCCCGAGGACCTGAAGACATTGCTCAAAGTGCTGCACCTCCGCGGGATCCGGGAAAAGGCATTGCAAAAGCAAATTCAGAAACACTTGGATTACATTACCCAAGCCTGTGTCAGGAACAAGGACGTCGCTATTATTGAATTAAACGAAAATGAAGACAATCAGGTAACCCGCGATCTAGTGGAGAACTGGTCGGTCGAAGAGCAAGCAATGGAGCTGGACCTGAGCATACTCCAGCAGGTGGAGGACTTGGAACGGAGGGTTGCATCAGCGAGTTTGCAAGTGAAGGGTTGGATGTGTCCAGAGCCTGCATCGGAAAGGGAGGACTTGGTATATTTTGAACATAAGTCACTTACTAAGTTGTTCAAGGAGCATGATGGAGAACTTACTGGTGACGAAGAAAACAGTGCGCATGCACTGGCTCGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAGAGAAGGTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCATTAGTGGTGATGGTGACGGAATTGAAGAGGATATTGCTCCAGGGCTCAGGGTCTGGAGAAGGGCCTTAGCAGAAGCTCGCAGTGCTGCGCAGGTAGCCCTGTGCATCCAGCAGTTACAGAGATCAATAGCATGGGAAAAATCAATTATGAAAGTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGAAGGGCCTTAGCAGAAGC
59.75
CTCCTCGTCGTCTTCTGAGC
59.9
152
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGAAGGGCCTTAGCAGAAGC
59.75
CCTGGTCTTTCTCCTCGTCG
59.83
162
PCR template sequence:
GAGAAGGGCCTTAGCAGAAGCTCGCAGTGCTGCGCAGGTAGCCCTGTGCATCCAGCAGTTACAGAGATCAATAGCATGGGAAAAATCAATTATGAAAGTTAATCAGATAGTAATTCACAATCAGATTCAGAAGGCTCAGAAGACGACGAGGAGAAAGACCAGGAGGAATCAGATAGTGACACTGAAGGCGAGAAACCTGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
35
Interacting miRNAs (#binding sites)
mmu-miR-207(3), mmu-miR-574-5p(3), mmu-miR-211-5p(2), mmu-miR-204-5p(2), mmu-miR-146a-5p(2), mmu-miR-125b-5p(2), mmu-miR-214-3p(2), mmu-miR-351-5p(2), mmu-miR-125a-5p(2), mmu-miR-370-3p(2), mmu-miR-188-3p(2), mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-122-5p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-298-5p(1), mmu-miR-216a-5p(1), mmu-miR-181b-5p(1), mmu-miR-149-5p(1), mmu-miR-136-5p(1), mmu-miR-127-3p(1), mmu-miR-676-3p(1), mmu-miR-182-5p(1), mmu-miR-541-5p(1), mmu-miR-324-3p(1), mmu-miR-690(1), mmu-miR-29b-2-5p(1), mmu-miR-5101(1), mmu-miR-484(1), mmu-miR-452-3p(1), mmu-miR-697(1), mmu-miR-3061-5p(1), mmu-miR-146b-5p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AATTATGAAAGTTAATCAGATAGTAA
siRNA sets
TACTATCTGATTAACTTTC, TATCTGATTAACTTTCATA, ACTATCTGATTAACTTTCA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBAZ2B_3899_ORF_1
1.0388
0.218374165
1
3558
ORF sequence:
ATGGTAAAGGGAATGCAGTGGTGTCTTTTGAAAGAAGAGGATGTCATTCCTCGTATCAGGGCAATGGACGGCCGAAGAGGAAGACCACCCAATCCAGATAGACCCAGAGCAAGAGAGGAATCCAGGATGAAACGCCGGAAGGGTCGCCCTCCCAATGTTGGCAGTGCAGAATTCCTAGATAACACAGATGCAAAATTACTAAGGAAACTGCAGGCTCAAGAAATAGCCAGACAAGCAGCACAAATAAAACTTTTGAGAAAACTTCAGAAGCAGGAACAGGCACGGGTTGCCAAAGAAGCTAAAAAACAGCAAGCGATAATGGCTGCGGAAGAGAAGCGCAAACAGAAAGAACAGATGAAGATTATAAAGCAGCAGGAAAAAATTAAGAGAATACAGCAAATCAGAATGGAGAAAGAACTGAGAGCTCAGCAGATTCTCGAGGCTAAAAAGAAAAAGAAGGAAGAAGCGGCAAATGCCAAATTATTGGAGGCCGAGAAACGAACCAAGGAGAAAGAACTGAGAAGACAGCAGGCTGTCCTTCTGAAACACCAGGAACGGGAGCGAAGGCGGCAGCATGTGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAAGCAGAAGAAAAAGAACGATTGAAGCAAGAGAAACGTGATGAGAAAAGATTGAATAAGGAACGCAAACTAGAGCAGCGGAGACTGGAGTTAGAAATGGCGAAGGAGCTAAAGAAACCTAAGGAAGACATGTGCTTAGCAGACCAAAAGCCCTTGCCAGAGTGGCCTCGCATCCCGGGACTTGTGCTCTCTGGAACCACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTGGTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTCAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATTACAGGATACAAGGCAAAAACAGCTCTGGGAGAACATTTGCTGAACGTTGGTGTGAATCGAGACAATGTGTCCGAGGTTTTGCAGATTTTCATGGAGGCCCACTGTGGGCAGACTGAGCTGACTGAGAGCCTGAAGACTAAAGCTTTCCAGGCTCACACTCCAGCACAGAAAGCGTCCATCCTGGCCTTCCTCGTTAACGAGCTGGCATGCAGCAAGAGTGTGGTGAGTGAGATTGACAAGAACATTGAATACATGTCTAACTTGAGAAGAGATAAATGGATGGTGGAAGGTAAACTCCGCAAGCTTAGGATAATTCATGCTAAGAAAACAGGCAAGAGAGACGCCTCAGGGGGCATTGACCTCGGGGAAGAACAACACCCCTTGGGCACGCCCACGCCAGGACGCAAGCGGAGAAGGAAGGGAGGGGACAGTGATTATGACGATGATGACGATGATGACAGCGACGACCAAGCTGATGAGGATGAGGAAGATGAGGAAGATAAAGATGACAAAAAAGGAAAGAAGACCGATATCTGTGAAGATGAGGATGAAGGTGACCAAACAGCCAGCGTTGAGGAGCTAGAAAAACAGATTGAAAAACTGAGCAAACAACAGAGCCAGTACAGACGAAAGCTCTTTGATGCTTCTCACTCACTACGCTCGATGATGTTTGGTCAGGATCGGTACCGACGCAGATACTGGATTCTCCCTCAATGTGGAGGGATTTTTGTAGAAGGCATGGAAAGTGGTGAAGGCCTAGAAGAAATTGCAAAAGAAAAAGAAAAGCTTAAAAAGGCAGAGAGTCTCCAGATCAAAGAAGAAGTATTTGAGACTTCTGCGGAGACATTAAACTGTTCCATTAGAGATCACTGCGAGCAGAAAGACGACCCAAAAGAGAAAGATAACACAAATCTATTTCTTCAGAAACCAGGCTCTTTCTCCAAGTTAAGCAAGCTTTTAGAGGTAGCTAAAATGCCTCCTGAGTCAGATGTTATGACCCCCCCAAAAGTGAATGTTAGTACAAACGGGGGCCCACTGTCTCATCAGAACAGCGGGAAGCATCCACTGGGGAGCGTTCCCTCAGCAACAACAGCACAAAGCCCCGTGGGAAAGACAGACGCCAGTCTCTTTAGCTCAGGCTCCGGCAGTTGTGGGAAGTTCTACAGTCCTCTCCCCAATGACCAGCTGTTAAAAACACTGACTGAAAAGAACAGACAGTGGTTTAGCCTTTTGCCAAAAACACCTTGCGATGACACGTCCCTGACCCACGCTGACCTGTCCACCACTCTGGTGACTCCTCAGTCTCAGCCACCATCTAAGTCACCTTCGCCGGCCCCAGCTGCACTGCTCGGACCCTCTTCTGTTCAGAGCCCCCCTGGACTGAACCCGTTTGCTCTGTCGCCTCTTCAGGTGAAAGGTGGTGTGTCTATGATGGGACTTCAGTTCTGTGGGTGGCCTGCTGGAGTGCTCGCTTCCAACGTCCCATTTACATCACCTTTGCCTGCTCTCGGCTCAGGGTTGGGACTGCCAGAAGGAAATGGCAGTAGTTCATTCTTGACTTCCAGTGTTGCTTCAAGTAAAAGTGACTCTCCAGTCCCTCCAGCTGAAAGACCCTCCAGCGCTCAGCCAGTGGCTGTTGAAGTAGCAAAGCCAGTAGATTTTCCTAGTCCCAAACCTATCCCAGAAGAAATGCAGTTCGGATGGTGGAGAATCATTGACCCCGAGGACCTGAAGACATTGCTCAAAGTGCTGCACCTCCGCGGGATCCGGGAAAAGGCATTGCAAAAGCAAATTCAGAAACACTTGGATTACATTACCCAAGCCTGTGTCAGGAACAAGGACGTCGCTATTATTGAATTAAACGAAAATGAAGACAATCAGGTAACCCGCGATCTAGTGGAGAACTGGTCGGTCGAAGAGCAAGCAATGGAGCTGGACCTGAGCATACTCCAGCAGGTGGAGGACTTGGAACGGAGGGTTGCATCAGCGAGTTTGCAAGTGAAGGGTTGGATGTGTCCAGAGCCTGCATCGGAAAGGGAGGACTTGGTATATTTTGAACATAAGTCACTTACTAAGTTGTTCAAGGAGCATGATGGAGAACTTACTGGTGACGAAGAAAACAGTGCGCATGCACTGGCTCGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAGAGAAGGTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCATTAGTGGTGATGGTGACGGAATTGAAGAGGATATTGCTCCAGGGCTCAGGGTCTGGAGAAGGGCCTTAGCAGAAGCTCGCAGTGCTGCGCAGGTAGCCCTGTGCATCCAGCAGTTACAGAGATCAATAGCATGGGAAAAATCAATTATGAAAGTTAATCAGATAGTAATTCACAATCAGATTCAGAAGGCTCAGAAGACGACGAGGAGAAAGACCAGGAGGAATCAGATAGTGACACTGAAGGCGAGAAACCTGCCGTGA
Peptide sequence:
MVKGMQWCLLKEEDVIPRIRAMDGRRGRPPNPDRPRAREESRMKRRKGRPPNVGSAEFLDNTDAKLLRKLQAQEIARQAAQIKLLRKLQKQEQARVAKEAKKQQAIMAAEEKRKQKEQMKIIKQQEKIKRIQQIRMEKELRAQQILEAKKKKKEEAANAKLLEAEKRTKEKELRRQQAVLLKHQERERRRQHVMLMKAMEARKKAEEKERLKQEKRDEKRLNKERKLEQRRLELEMAKELKKPKEDMCLADQKPLPEWPRIPGLVLSGTTFSDCLMVVQFLRNFGKVLGFDVNIDVPNLSVLQEGLLNIGDSMGEVQDLLVRLLSAAVCDPGLITGYKAKTALGEHLLNVGVNRDNVSEVLQIFMEAHCGQTELTESLKTKAFQAHTPAQKASILAFLVNELACSKSVVSEIDKNIEYMSNLRRDKWMVEGKLRKLRIIHAKKTGKRDASGGIDLGEEQHPLGTPTPGRKRRRKGGDSDYDDDDDDDSDDQADEDEEDEEDKDDKKGKKTDICEDEDEGDQTASVEELEKQIEKLSKQQSQYRRKLFDASHSLRSMMFGQDRYRRRYWILPQCGGIFVEGMESGEGLEEIAKEKEKLKKAESLQIKEEVFETSAETLNCSIRDHCEQKDDPKEKDNTNLFLQKPGSFSKLSKLLEVAKMPPESDVMTPPKVNVSTNGGPLSHQNSGKHPLGSVPSATTAQSPVGKTDASLFSSGSGSCGKFYSPLPNDQLLKTLTEKNRQWFSLLPKTPCDDTSLTHADLSTTLVTPQSQPPSKSPSPAPAALLGPSSVQSPPGLNPFALSPLQVKGGVSMMGLQFCGWPAGVLASNVPFTSPLPALGSGLGLPEGNGSSSFLTSSVASSKSDSPVPPAERPSSAQPVAVEVAKPVDFPSPKPIPEEMQFGWWRIIDPEDLKTLLKVLHLRGIREKALQKQIQKHLDYITQACVRNKDVAIIELNENEDNQVTRDLVENWSVEEQAMELDLSILQQVEDLERRVASASLQVKGWMCPEPASEREDLVYFEHKSLTKLFKEHDGELTGDEENSAHALARKSDNPLDIAVTRLADLERNIERRYLKSPLSTTIQIKLDNVGTVTVPAPAPSISGDGDGIEEDIAPGLRVWRRALAEARSAAQVALCIQQLQRSIAWEKSIMKVNQIVIHNQIQKAQKTTRRKTRRNQIVTLKARNLP
IRESfinder result
IRESfinder score
0.418557549
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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