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mmu_circBaz2b_387
Basic information of circular RNA
PanCircBase ID:
mmu_circBaz2b_387
mm39_Chr. Position ID:
chr2|59814125|59836533|-
Gene name:
Baz2b
Transcript:
ENSMUST00000137480.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
5,4,3
Exon/intron offsets:
0,17724,22261
Genomic length:
22408
Exon/intron sizes in nt:
1,89,51,147
Flanking exon/introns:
chr2:59809051-59814125|chr2:59836533-59907213
Splice length:
387
Other database IDs:
CIRCpedia: MMU_CIRCpedia_39882, circAtlas: mmu-Baz2b_0007
Human Ortholog IDs:
Mature spliced Sequence:
ATATGGAGTCTGGAGAACTGTTGCCATCCTCACCAGCCTCCTCCACTACACCAACATCATCTTCTGCTCCTTCCGTGGCTTCAGCAGTTTCAAAGAGCAGCCTTTCCACAGGAGCTGCTTCACTTAGTTCTACAGCCAGCCCATGTGTACTTGAAGCTGGGAAGTCCAAGATCAAGGTATCACCTGACTCAGTGTCTGGACATTTATTCAGAGCAGCTGGGGATCAGCCGTTTAACCTGTCCACAGTGCCGAGTGCCTTCCCAATGCTCAGCCACCCAGGCTTTGGTCTACATTCAGCCAGCTCAGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCTTAGCCGCACATCCCCAGCTAACATCTTTTCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGCTCAGGGCATTCAGAA
60.03
GTTGGTGTAGTGGAGGAGGC
60.04
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGCTCAGGGCATTCAGAA
60.03
TTGGTGTAGTGGAGGAGGCT
60.18
144
PCR template sequence:
CTACATTCAGCCAGCTCAGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCTTAGCCGCACATCCCCAGCTAACATCTTTTCCAGATATGGAGTCTGGAGAACTGTTGCCATCCTCACCAGCCTCCTCCACTACACCAACATCATCTTCTGCTCCTTCCGTGGCTTCAGCAGTTTCAAAGAGCAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-124-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ACATCTTTTCCAGATATGGAGTCTGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBAZ2B_387_ORF_1
1.0006
-0.01088078
0.89272309
771
ORF sequence:
ATGGAGTCTGGAGAACTGTTGCCATCCTCACCAGCCTCCTCCACTACACCAACATCATCTTCTGCTCCTTCCGTGGCTTCAGCAGTTTCAAAGAGCAGCCTTTCCACAGGAGCTGCTTCACTTAGTTCTACAGCCAGCCCATGTGTACTTGAAGCTGGGAAGTCCAAGATCAAGGTATCACCTGACTCAGTGTCTGGACATTTATTCAGAGCAGCTGGGGATCAGCCGTTTAACCTGTCCACAGTGCCGAGTGCCTTCCCAATGCTCAGCCACCCAGGCTTTGGTCTACATTCAGCCAGCTCAGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCTTAGCCGCACATCCCCAGCTAACATCTTTTCCAGATATGGAGTCTGGAGAACTGTTGCCATCCTCACCAGCCTCCTCCACTACACCAACATCATCTTCTGCTCCTTCCGTGGCTTCAGCAGTTTCAAAGAGCAGCCTTTCCACAGGAGCTGCTTCACTTAGTTCTACAGCCAGCCCATGTGTACTTGAAGCTGGGAAGTCCAAGATCAAGGTATCACCTGACTCAGTGTCTGGACATTTATTCAGAGCAGCTGGGGATCAGCCGTTTAACCTGTCCACAGTGCCGAGTGCCTTCCCAATGCTCAGCCACCCAGGCTTTGGTCTACATTCAGCCAGCTCAGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCTTAGCCGCACATCCCCAGCTAACATCTTTTCCA
Peptide sequence:
MESGELLPSSPASSTTPTSSSAPSVASAVSKSSLSTGAASLSSTASPCVLEAGKSKIKVSPDSVSGHLFRAAGDQPFNLSTVPSAFPMLSHPGFGLHSASSGHSEFGGLGTLGTPTALAAHPQLTSFPDMESGELLPSSPASSTTPTSSSAPSVASAVSKSSLSTGAASLSSTASPCVLEAGKSKIKVSPDSVSGHLFRAAGDQPFNLSTVPSAFPMLSHPGFGLHSASSGHSEFGGLGTLGTPTALAAHPQLTSFP
IRESfinder result
IRESfinder score
0.845097946
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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