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mmu_circBaz1b_522
Basic information of circular RNA
PanCircBase ID:
mmu_circBaz1b_522
mm39_Chr. Position ID:
chr5|135233843|135239792|+
Gene name:
Baz1b
Transcript:
ENSMUST00000002825.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
4,5,6
Exon/intron offsets:
0,4053,5751
Genomic length:
5949
Exon/intron sizes in nt:
20,21,22,198
Flanking exon/introns:
chr5:135227169-135233843|chr5:135239792-135245443
Splice length:
522
Other database IDs:
CIRCpedia: MMU_CIRCpedia_39665, circAtlas: mmu-Baz1b_0001
circAtlas: hsa-BAZ1B_0002
Human Ortholog IDs:
Mature spliced Sequence:
GTTGGGAAGGAGAAAATGCTCAAGGTGAAGATAGTGAAGATTCATCCTTTGGAGAAAGTTGATGAAGAAGCTGTTGAGAAGAAATCTGATGGGGCCTGTGATTCTCCGTCAAGTGACAAAGAAAATTCCAGTCAAATGGCTCAGGACCTCCAGAAGAAGGAGACAGTAGTCAAAGAGGATGAAGGCAGGAGAGAGAGTATTAATGACAGAGCGCGTAGGTCTCCACGAAAACTTCCTACTTCATTAAAAAAAGGAGAAAGAAAATGGGCTCCTCCAAAATTTCTGCCTCACAAATATGATGTGAAGCTACAAAATGAAGATAAGATCATCAGCAATGTGCCAGCAGACAGCTTGATTCGAACGGAGAGACCACCAAATAAGGAGATACTTCGATACTTTATTCGGCATAATGCCTTACGTGCTGGTACTGGTGAGAATGCACCTTGGGTGGTGGAAGATGAATTGGTGAAGAAATATTCCCTGCCTAGCAAGTTCAGTGACTTTTTACTTGACCCATATAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCCTGCCTAGCAAGTTCAGT
59.67
CACAGGCCCCATCAGATTTCT
60.06
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCTGCCTAGCAAGTTCAGT
59.67
ACAGGCCCCATCAGATTTCT
58.7
143
PCR template sequence:
TGGTACTGGTGAGAATGCACCTTGGGTGGTGGAAGATGAATTGGTGAAGAAATATTCCCTGCCTAGCAAGTTCAGTGACTTTTTACTTGACCCATATAAGGTTGGGAAGGAGAAAATGCTCAAGGTGAAGATAGTGAAGATTCATCCTTTGGAGAAAGTTGATGAAGAAGCTGTTGAGAAGAAATCTGATGGGGCCTGTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-18a-5p(1), mmu-miR-98-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGACCCATATAAGGTTGGGAAGGAGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBAZ1B_522_ORF_1
1.1793
0.210066419
0.994568248
1029
ORF sequence:
ATGCTCAAGGTGAAGATAGTGAAGATTCATCCTTTGGAGAAAGTTGATGAAGAAGCTGTTGAGAAGAAATCTGATGGGGCCTGTGATTCTCCGTCAAGTGACAAAGAAAATTCCAGTCAAATGGCTCAGGACCTCCAGAAGAAGGAGACAGTAGTCAAAGAGGATGAAGGCAGGAGAGAGAGTATTAATGACAGAGCGCGTAGGTCTCCACGAAAACTTCCTACTTCATTAAAAAAAGGAGAAAGAAAATGGGCTCCTCCAAAATTTCTGCCTCACAAATATGATGTGAAGCTACAAAATGAAGATAAGATCATCAGCAATGTGCCAGCAGACAGCTTGATTCGAACGGAGAGACCACCAAATAAGGAGATACTTCGATACTTTATTCGGCATAATGCCTTACGTGCTGGTACTGGTGAGAATGCACCTTGGGTGGTGGAAGATGAATTGGTGAAGAAATATTCCCTGCCTAGCAAGTTCAGTGACTTTTTACTTGACCCATATAAGGTTGGGAAGGAGAAAATGCTCAAGGTGAAGATAGTGAAGATTCATCCTTTGGAGAAAGTTGATGAAGAAGCTGTTGAGAAGAAATCTGATGGGGCCTGTGATTCTCCGTCAAGTGACAAAGAAAATTCCAGTCAAATGGCTCAGGACCTCCAGAAGAAGGAGACAGTAGTCAAAGAGGATGAAGGCAGGAGAGAGAGTATTAATGACAGAGCGCGTAGGTCTCCACGAAAACTTCCTACTTCATTAAAAAAAGGAGAAAGAAAATGGGCTCCTCCAAAATTTCTGCCTCACAAATATGATGTGAAGCTACAAAATGAAGATAAGATCATCAGCAATGTGCCAGCAGACAGCTTGATTCGAACGGAGAGACCACCAAATAAGGAGATACTTCGATACTTTATTCGGCATAATGCCTTACGTGCTGGTACTGGTGAGAATGCACCTTGGGTGGTGGAAGATGAATTGGTGAAGAAATATTCCCTGCCTAGCAAGTTCAGTGACTTTTTACTTGACCCATATAAG
Peptide sequence:
MLKVKIVKIHPLEKVDEEAVEKKSDGACDSPSSDKENSSQMAQDLQKKETVVKEDEGRRESINDRARRSPRKLPTSLKKGERKWAPPKFLPHKYDVKLQNEDKIISNVPADSLIRTERPPNKEILRYFIRHNALRAGTGENAPWVVEDELVKKYSLPSKFSDFLLDPYKVGKEKMLKVKIVKIHPLEKVDEEAVEKKSDGACDSPSSDKENSSQMAQDLQKKETVVKEDEGRRESINDRARRSPRKLPTSLKKGERKWAPPKFLPHKYDVKLQNEDKIISNVPADSLIRTERPPNKEILRYFIRHNALRAGTGENAPWVVEDELVKKYSLPSKFSDFLLDPYK
IRESfinder result
IRESfinder score
0.441571179
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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