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mmu_circBaz1b_2227
Basic information of circular RNA
PanCircBase ID:
mmu_circBaz1b_2227
mm39_Chr. Position ID:
chr5|135233843|135247148|+
Gene name:
Baz1b
Transcript:
ENSMUST00000002825.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
4,5,6,7
Exon/intron offsets:
0,4053,5751,11600
Genomic length:
13305
Exon/intron sizes in nt:
20,21,22,19,81,705
Flanking exon/introns:
chr5:135227169-135233843|chr5:135247148-135250811
Splice length:
2227
Other database IDs:
circAtlas: mmu-Baz1b_0017
circAtlas: hsa-BAZ1B_0046
Human Ortholog IDs:
Mature spliced Sequence:
GTTGGGAAGGAGAAAATGCTCAAGGTGAAGATAGTGAAGATTCATCCTTTGGAGAAAGTTGATGAAGAAGCTGTTGAGAAGAAATCTGATGGGGCCTGTGATTCTCCGTCAAGTGACAAAGAAAATTCCAGTCAAATGGCTCAGGACCTCCAGAAGAAGGAGACAGTAGTCAAAGAGGATGAAGGCAGGAGAGAGAGTATTAATGACAGAGCGCGTAGGTCTCCACGAAAACTTCCTACTTCATTAAAAAAAGGAGAAAGAAAATGGGCTCCTCCAAAATTTCTGCCTCACAAATATGATGTGAAGCTACAAAATGAAGATAAGATCATCAGCAATGTGCCAGCAGACAGCTTGATTCGAACGGAGAGACCACCAAATAAGGAGATACTTCGATACTTTATTCGGCATAATGCCTTACGTGCTGGTACTGGTGAGAATGCACCTTGGGTGGTGGAAGATGAATTGGTGAAGAAATATTCCCTGCCTAGCAAGTTCAGTGACTTTTTACTTGACCCATATAAGTATATGACTCTCAATCCCTCTACCAAGAGGAGGAATACTGGATCTCCAGACAGGAAGCCCTCAAAGAAACCTAAGAGAGACAGTTCTTCTCTGAGTTCCCCACTAAACCCTAAGCTGTGGTGTCATGTGCACTTGGAGAAGTCGTTAAATGGCCCACCACTCAAAGTAAAGAACTCAAAGAATTCCAAGTCTCCGGAAGAACATTTGGAAGGGGTGATGAAAATTATGTCCCCCAACAACAACAAGCTACACAGCTTCCACATTCCTAAGAAAGGCCCAGCCGCCAAGAAGCCAGGGAAGCACAGTGACAAACCTCTGAAGGCCAAGGGCAGAGGCAAAGGCATCCTGAATGGACAGAAGTCCACAGGCAACTCCAAATCACCCAGCAAGTGTGTGAAGACTCCTAAGACCAAAATGAAGCAGATGACTTTGTTGGATATGGCCAAAGGGACTCAGAAGATGACCCGCACCCCACGGAGTTCTGGGGGTGTGCCAAGGTCTTCTGGTAAACCTCACAAACACCTGCCTCCTGCAGCTCTGCATCTGATTGCCTATTACAAAGAAAATAAAGACAAAGAGGACAAGAAGAGTGCTCTGTCCTGTGTTATCTCCAAAACAGCACGTCTCCTCTCCAATGAAGATAGAGCCCGTCTTCCAGAAGAGCTCCGGGCTCTTGTCCAGAAACGCTATGAGCTCCTGGAACATAAAAAGAGGTGGGCCTCTATGTCTGAAGAGCAACGGAAAGAATATTTGAAAAAGAAACGACAGGAGCTAAAGGAGAGGTTGCGGGAAAAAGCCAAAGAACGGAGAGAGAGAGAAATGCTGGAGAGGTTAGAAAAGCAGAAGCGATTTGAGGACCAGGAGTTAGGTGGCAGAAACCTCCCAGCATTCAGGCTGGTAGATACCCCTGAGGGGCTCCCCAACACTCTTTTTGGGGATGTGGCCCTGGTGGTGGAGTTCCTGAGCTGTTACTCTGGGTTGCTCTTGCCCGATGCTCAGTACCCTATCACTGCTGTGTCCCTAATGGAAGCCTTGAGTGCAGATAAAGGTGGTTTTTTGTACTTGAACAGAGTGCTGGTCATCCTGCTACAGACCTTACTTCAGGATGAAATTGCAGAAGACTATGGAGAACTGGGAATGAAGCTGTCAGAAATCCCCCTCACCCTGCATTCTGTCTCAGAGCTGGTCCGGCTCTGCTTGCGCAGGTGTGATGTCCAGGAGGACAGCGAGGGCTCAGAAACAGATGACAATAAAGATTCCACACCATTTGAGGATAATGAGGTGCAAGACGAATTTCTAGAGAAGCTGGAGACATCAGAATTCTTTGAGCTGACCTCAGAGGAGAAGCTACGGATATTGACAGCTCTTTGCCACCGTATCCTCATGACATACTCTGTGCAAGACCACATGGAGACAAGACAGCAGGTGTCTGCAGAGTTGTGGAAGGAGCGGCTTGCTGTGCTGAAGGAGGAGAATGATAAGAAGAGAGCAGAGAAGCAAAAGCGGAAGGAGATGGAAGCCAGAAATAAAGAAAATGGCAAAGAGGAGAATGTGCTAGGCAAAGTGGACAGGAAAAAAGAAATTGTGAAGATTGAACAGCAAGTAGAAGTGGAAGCAGATGACATGATCAGTGCTGTCAAGAGCAGAAGGCTGCTTAGCATGCAAGCTAAGAGGAAGCGGGAAATCCAGGAGAGAGAAACAAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGAAGGCTGCTTAGCATGCA
60.03
CACAGGCCCCATCAGATTTCT
60.06
161
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGAAGGCTGCTTAGCATGCA
60.03
ACAGGCCCCATCAGATTTCT
58.7
160
PCR template sequence:
GAAGTGGAAGCAGATGACATGATCAGTGCTGTCAAGAGCAGAAGGCTGCTTAGCATGCAAGCTAAGAGGAAGCGGGAAATCCAGGAGAGAGAAACAAAAGGTTGGGAAGGAGAAAATGCTCAAGGTGAAGATAGTGAAGATTCATCCTTTGGAGAAAGTTGATGAAGAAGCTGTTGAGAAGAAATCTGATGGGGCCTGTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
17
Interacting miRNAs (#binding sites)
mmu-miR-1a-3p(1), mmu-miR-7b-5p(1), mmu-miR-206-3p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-335-5p(1), mmu-miR-18a-5p(1), mmu-miR-431-5p(1), mmu-miR-194-5p(1), mmu-miR-98-5p(1), mmu-miR-207(1), mmu-miR-335-3p(1), mmu-miR-3065-5p(1), mmu-miR-1199-5p(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
AGAGAAACAAAAGGTTGGGAAGGAGA
siRNA sets
CTTCCCAACCTTTTGTTTC,TTCCCAACCTTTTGTTTCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBAZ1B_2227_ORF_1
1.0013
0.275198164
0.999999209
2274
ORF sequence:
ATGCTCAAGGTGAAGATAGTGAAGATTCATCCTTTGGAGAAAGTTGATGAAGAAGCTGTTGAGAAGAAATCTGATGGGGCCTGTGATTCTCCGTCAAGTGACAAAGAAAATTCCAGTCAAATGGCTCAGGACCTCCAGAAGAAGGAGACAGTAGTCAAAGAGGATGAAGGCAGGAGAGAGAGTATTAATGACAGAGCGCGTAGGTCTCCACGAAAACTTCCTACTTCATTAAAAAAAGGAGAAAGAAAATGGGCTCCTCCAAAATTTCTGCCTCACAAATATGATGTGAAGCTACAAAATGAAGATAAGATCATCAGCAATGTGCCAGCAGACAGCTTGATTCGAACGGAGAGACCACCAAATAAGGAGATACTTCGATACTTTATTCGGCATAATGCCTTACGTGCTGGTACTGGTGAGAATGCACCTTGGGTGGTGGAAGATGAATTGGTGAAGAAATATTCCCTGCCTAGCAAGTTCAGTGACTTTTTACTTGACCCATATAAGTATATGACTCTCAATCCCTCTACCAAGAGGAGGAATACTGGATCTCCAGACAGGAAGCCCTCAAAGAAACCTAAGAGAGACAGTTCTTCTCTGAGTTCCCCACTAAACCCTAAGCTGTGGTGTCATGTGCACTTGGAGAAGTCGTTAAATGGCCCACCACTCAAAGTAAAGAACTCAAAGAATTCCAAGTCTCCGGAAGAACATTTGGAAGGGGTGATGAAAATTATGTCCCCCAACAACAACAAGCTACACAGCTTCCACATTCCTAAGAAAGGCCCAGCCGCCAAGAAGCCAGGGAAGCACAGTGACAAACCTCTGAAGGCCAAGGGCAGAGGCAAAGGCATCCTGAATGGACAGAAGTCCACAGGCAACTCCAAATCACCCAGCAAGTGTGTGAAGACTCCTAAGACCAAAATGAAGCAGATGACTTTGTTGGATATGGCCAAAGGGACTCAGAAGATGACCCGCACCCCACGGAGTTCTGGGGGTGTGCCAAGGTCTTCTGGTAAACCTCACAAACACCTGCCTCCTGCAGCTCTGCATCTGATTGCCTATTACAAAGAAAATAAAGACAAAGAGGACAAGAAGAGTGCTCTGTCCTGTGTTATCTCCAAAACAGCACGTCTCCTCTCCAATGAAGATAGAGCCCGTCTTCCAGAAGAGCTCCGGGCTCTTGTCCAGAAACGCTATGAGCTCCTGGAACATAAAAAGAGGTGGGCCTCTATGTCTGAAGAGCAACGGAAAGAATATTTGAAAAAGAAACGACAGGAGCTAAAGGAGAGGTTGCGGGAAAAAGCCAAAGAACGGAGAGAGAGAGAAATGCTGGAGAGGTTAGAAAAGCAGAAGCGATTTGAGGACCAGGAGTTAGGTGGCAGAAACCTCCCAGCATTCAGGCTGGTAGATACCCCTGAGGGGCTCCCCAACACTCTTTTTGGGGATGTGGCCCTGGTGGTGGAGTTCCTGAGCTGTTACTCTGGGTTGCTCTTGCCCGATGCTCAGTACCCTATCACTGCTGTGTCCCTAATGGAAGCCTTGAGTGCAGATAAAGGTGGTTTTTTGTACTTGAACAGAGTGCTGGTCATCCTGCTACAGACCTTACTTCAGGATGAAATTGCAGAAGACTATGGAGAACTGGGAATGAAGCTGTCAGAAATCCCCCTCACCCTGCATTCTGTCTCAGAGCTGGTCCGGCTCTGCTTGCGCAGGTGTGATGTCCAGGAGGACAGCGAGGGCTCAGAAACAGATGACAATAAAGATTCCACACCATTTGAGGATAATGAGGTGCAAGACGAATTTCTAGAGAAGCTGGAGACATCAGAATTCTTTGAGCTGACCTCAGAGGAGAAGCTACGGATATTGACAGCTCTTTGCCACCGTATCCTCATGACATACTCTGTGCAAGACCACATGGAGACAAGACAGCAGGTGTCTGCAGAGTTGTGGAAGGAGCGGCTTGCTGTGCTGAAGGAGGAGAATGATAAGAAGAGAGCAGAGAAGCAAAAGCGGAAGGAGATGGAAGCCAGAAATAAAGAAAATGGCAAAGAGGAGAATGTGCTAGGCAAAGTGGACAGGAAAAAAGAAATTGTGAAGATTGAACAGCAAGTAGAAGTGGAAGCAGATGACATGATCAGTGCTGTCAAGAGCAGAAGGCTGCTTAGCATGCAAGCTAAGAGGAAGCGGGAAATCCAGGAGAGAGAAACAAAAGGTTGGGAAGGAGAAAATGCTCAAGGTGAAGATAGTGAAGATTCATCCTTTGGAGAAAGTTGA
Peptide sequence:
MLKVKIVKIHPLEKVDEEAVEKKSDGACDSPSSDKENSSQMAQDLQKKETVVKEDEGRRESINDRARRSPRKLPTSLKKGERKWAPPKFLPHKYDVKLQNEDKIISNVPADSLIRTERPPNKEILRYFIRHNALRAGTGENAPWVVEDELVKKYSLPSKFSDFLLDPYKYMTLNPSTKRRNTGSPDRKPSKKPKRDSSSLSSPLNPKLWCHVHLEKSLNGPPLKVKNSKNSKSPEEHLEGVMKIMSPNNNKLHSFHIPKKGPAAKKPGKHSDKPLKAKGRGKGILNGQKSTGNSKSPSKCVKTPKTKMKQMTLLDMAKGTQKMTRTPRSSGGVPRSSGKPHKHLPPAALHLIAYYKENKDKEDKKSALSCVISKTARLLSNEDRARLPEELRALVQKRYELLEHKKRWASMSEEQRKEYLKKKRQELKERLREKAKERREREMLERLEKQKRFEDQELGGRNLPAFRLVDTPEGLPNTLFGDVALVVEFLSCYSGLLLPDAQYPITAVSLMEALSADKGGFLYLNRVLVILLQTLLQDEIAEDYGELGMKLSEIPLTLHSVSELVRLCLRRCDVQEDSEGSETDDNKDSTPFEDNEVQDEFLEKLETSEFFELTSEEKLRILTALCHRILMTYSVQDHMETRQQVSAELWKERLAVLKEENDKKRAEKQKRKEMEARNKENGKEENVLGKVDRKKEIVKIEQQVEVEADDMISAVKSRRLLSMQAKRKREIQERETKGWEGENAQGEDSEDSSFGES
IRESfinder result
IRESfinder score
0.368757285
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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