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mmu_circBaiap2l1_469
Basic information of circular RNA
PanCircBase ID:
mmu_circBaiap2l1_469
mm39_Chr. Position ID:
chr5|144217629|144221406|-
Gene name:
Baiap2l1
Transcript:
ENSMUST00000055190.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
9,8,7
Exon/intron offsets:
0,1170,3624
Genomic length:
3777
Exon/intron sizes in nt:
14,81,68,153
Flanking exon/introns:
chr5:144215548-144217629|chr5:144221406-144222267
Splice length:
469
Other database IDs:
circAtlas: mmu-Baiap2l1_0006
Human Ortholog IDs:
Mature spliced Sequence:
TATGTGGAGACGGTGACGTCTCGCCAGAGTGAGATCCAGAAGTTCATTGCCGATGGCTGCAAAGAAGCCCTGCTTGAGGAAAAAAGGCGCTTCTGCTTTCTGGTGGACAAGCACTGCAGCTTTGCCAGTCACATACACTACTATCACATGCAGTCTGCAGAGTTACTTAATTCCAAGCTGCCCCGGTGGCAGGAAACCTGTTGTGATGCCACAAAAGTCCCAGAGAAAATCATGAACATGATAGAAGAGATAAAGACGCCCATCTCCACCCCCGTGTCCGGGACGCCGCAGCCATCGCCCATGATCGAGAGAAGCAAGATGATTGGGAAAGATTATGACACCCTTTCTAAATACTCACCAAAGATGCCCCCTGCTCCTTCAGTCAAAGCCTACACCAGTCCTTTGATTGACATGTTCAATAACCCAGCTACAGCTGCACAGAGTTCAGAAAAAACAAACAACTCCACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTCCTTCAGTCAAAGCCT
59.23
CAAGCAGGGCTTCTTTGCAG
60.04
174
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTCCTTCAGTCAAAGCCT
59.23
CTCAAGCAGGGCTTCTTTGC
59.76
176
PCR template sequence:
CCTGCTCCTTCAGTCAAAGCCTACACCAGTCCTTTGATTGACATGTTCAATAACCCAGCTACAGCTGCACAGAGTTCAGAAAAAACAAACAACTCCACAGTATGTGGAGACGGTGACGTCTCGCCAGAGTGAGATCCAGAAGTTCATTGCCGATGGCTGCAAAGAAGCCCTGCTTGAGGAAAAAAGGCGCTTCTGCTTTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-134-5p(1), mmu-miR-325-3p(1), mmu-miR-5101(1)
siRNAs for circular RNA silencing
Junction sequence
AACAACTCCACAGTATGTGGAGACGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBAIAP2L1_469_ORF_1
0.9003
0.237262355
0.483462445
354
ORF sequence:
ATGCAGTCTGCAGAGTTACTTAATTCCAAGCTGCCCCGGTGGCAGGAAACCTGTTGTGATGCCACAAAAGTCCCAGAGAAAATCATGAACATGATAGAAGAGATAAAGACGCCCATCTCCACCCCCGTGTCCGGGACGCCGCAGCCATCGCCCATGATCGAGAGAAGCAAGATGATTGGGAAAGATTATGACACCCTTTCTAAATACTCACCAAAGATGCCCCCTGCTCCTTCAGTCAAAGCCTACACCAGTCCTTTGATTGACATGTTCAATAACCCAGCTACAGCTGCACAGAGTTCAGAAAAAACAAACAACTCCACAGTATGTGGAGACGGTGACGTCTCGCCAGAGTGA
Peptide sequence:
MQSAELLNSKLPRWQETCCDATKVPEKIMNMIEEIKTPISTPVSGTPQPSPMIERSKMIGKDYDTLSKYSPKMPPAPSVKAYTSPLIDMFNNPATAAQSSEKTNNSTVCGDGDVSPE
IRESfinder result
IRESfinder score
0.450101731
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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