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mmu_circBaiap2l1_1217
Basic information of circular RNA
PanCircBase ID:
mmu_circBaiap2l1_1217
mm39_Chr. Position ID:
chr5|144212582|144223121|-
Gene name:
Baiap2l1
Transcript:
ENSMUST00000055190.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
12,11,10,9,8,7,6,5,4
Exon/intron offsets:
0,1872,2755,5047,6217,8671,9685,10302,10477
Genomic length:
10539
Exon/intron sizes in nt:
193,72,211,148,168,153,138,72,62
Flanking exon/introns:
chr5:144203455-144212582|chr5:144223121-144255738
Splice length:
1217
Other database IDs:
circAtlas: mmu-Baiap2l1_0003
circAtlas: hsa-BAIAP2L1_0001, CIRCpedia: HSA_CIRCpedia_349057
Human Ortholog IDs:
Mature spliced Sequence:
GCCATGTCCTCATAGAGATTTCCAGCACCCACAAGAAACTCAATGAGACTCTTGATGAAAATTTCAAAAAATTCCATAAGGATATTATCCATGAGCTGGAGAAGAAGACAGAACTTGATGTAAAGTATATGAACGCTACTCTTAAAAGATATCAAGCAGAGCACAGGAATAAATTAGATTCTTTGGAGAAATCTCAGGCGGAGCTGAAGAAGATCAGAAGAAAAAGTCAAGGTGGACGAAACGCACTCAAATACGAGCACAAAGAAATTGAGTATGTGGAGACGGTGACGTCTCGCCAGAGTGAGATCCAGAAGTTCATTGCCGATGGCTGCAAAGAAGCCCTGCTTGAGGAAAAAAGGCGCTTCTGCTTTCTGGTGGACAAGCACTGCAGCTTTGCCAGTCACATACACTACTATCACATGCAGTCTGCAGAGTTACTTAATTCCAAGCTGCCCCGGTGGCAGGAAACCTGTTGTGATGCCACAAAAGTCCCAGAGAAAATCATGAACATGATAGAAGAGATAAAGACGCCCATCTCCACCCCCGTGTCCGGGACGCCGCAGCCATCGCCCATGATCGAGAGAAGCAAGATGATTGGGAAAGATTATGACACCCTTTCTAAATACTCACCAAAGATGCCCCCTGCTCCTTCAGTCAAAGCCTACACCAGTCCTTTGATTGACATGTTCAATAACCCAGCTACAGCTGCACAGAGTTCAGAAAAAACAAACAACTCCACAGCAAACACTGGGGAAGATCCCAGTCTACAGCGATCGGTTTCTGTTGCAACTGGGCTGAACATGATGAAGAAGCAGAAGGTGAAGACCATCTTCCCTCACACGGCTGGCAACAATAAGACCCTACTGAGCTTTGCCCAGGGGGACGTCCTCACACTGCTCATCCCTGAGGAGAAGGACGGCTGGCTCTACGGGGAGCATGACACCACCAAAGCGAGGGGCTGGTTCCCATCGTCATATACAAAGTTGCTGGAAGAAAATGAAGCAATGTCTGTCCCTACACCAAGCCCTGCACCCGTGAGAAGCATCAGCACGGTGGACCTGACTGAGAAGAGCAGCGTTGTCATCCCACCTCCCGACTACTTGGAGTGCCTGTCCATGGGAGCCACCTCAGACAAGAAAGCGGGCGCTCCCAAGGTGCCTTCTGCTTCTACCTTCAGAGCGCCAGTGTCCAGACCAGACGCCACATCCACCTCTCCC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGAGCCACCTCAGACAAGAA
59.31
GAGTTTCTTGTGGGTGCTGG
59.05
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGGAGCCACCTCAGACAAGA
61.19
AGTTTCTTGTGGGTGCTGGA
59.45
140
PCR template sequence:
GGGAGCCACCTCAGACAAGAAAGCGGGCGCTCCCAAGGTGCCTTCTGCTTCTACCTTCAGAGCGCCAGTGTCCAGACCAGACGCCACATCCACCTCTCCCGCCATGTCCTCATAGAGATTTCCAGCACCCACAAGAAACTCAATGAGACTCTTGATGAAAATTTCAAAAAATTCCATAAGGATATTATCCATGAGCTGGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-134-5p(1), mmu-miR-24-3p(1), mmu-miR-325-3p(1), mmu-miR-207(1), mmu-miR-5101(1)
siRNAs for circular RNA silencing
Junction sequence
ATCCACCTCTCCCGCCATGTCCTCAT
siRNA sets
ATGAGGACATGGCGGGAGA, TGAGGACATGGCGGGAGAG, GAGGACATGGCGGGAGAGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBAIAP2L1_1217_ORF_1
1.0369
0.309268581
0.997155609
1104
ORF sequence:
ATGAACGCTACTCTTAAAAGATATCAAGCAGAGCACAGGAATAAATTAGATTCTTTGGAGAAATCTCAGGCGGAGCTGAAGAAGATCAGAAGAAAAAGTCAAGGTGGACGAAACGCACTCAAATACGAGCACAAAGAAATTGAGTATGTGGAGACGGTGACGTCTCGCCAGAGTGAGATCCAGAAGTTCATTGCCGATGGCTGCAAAGAAGCCCTGCTTGAGGAAAAAAGGCGCTTCTGCTTTCTGGTGGACAAGCACTGCAGCTTTGCCAGTCACATACACTACTATCACATGCAGTCTGCAGAGTTACTTAATTCCAAGCTGCCCCGGTGGCAGGAAACCTGTTGTGATGCCACAAAAGTCCCAGAGAAAATCATGAACATGATAGAAGAGATAAAGACGCCCATCTCCACCCCCGTGTCCGGGACGCCGCAGCCATCGCCCATGATCGAGAGAAGCAAGATGATTGGGAAAGATTATGACACCCTTTCTAAATACTCACCAAAGATGCCCCCTGCTCCTTCAGTCAAAGCCTACACCAGTCCTTTGATTGACATGTTCAATAACCCAGCTACAGCTGCACAGAGTTCAGAAAAAACAAACAACTCCACAGCAAACACTGGGGAAGATCCCAGTCTACAGCGATCGGTTTCTGTTGCAACTGGGCTGAACATGATGAAGAAGCAGAAGGTGAAGACCATCTTCCCTCACACGGCTGGCAACAATAAGACCCTACTGAGCTTTGCCCAGGGGGACGTCCTCACACTGCTCATCCCTGAGGAGAAGGACGGCTGGCTCTACGGGGAGCATGACACCACCAAAGCGAGGGGCTGGTTCCCATCGTCATATACAAAGTTGCTGGAAGAAAATGAAGCAATGTCTGTCCCTACACCAAGCCCTGCACCCGTGAGAAGCATCAGCACGGTGGACCTGACTGAGAAGAGCAGCGTTGTCATCCCACCTCCCGACTACTTGGAGTGCCTGTCCATGGGAGCCACCTCAGACAAGAAAGCGGGCGCTCCCAAGGTGCCTTCTGCTTCTACCTTCAGAGCGCCAGTGTCCAGACCAGACGCCACATCCACCTCTCCCGCCATGTCCTCATAG
Peptide sequence:
MNATLKRYQAEHRNKLDSLEKSQAELKKIRRKSQGGRNALKYEHKEIEYVETVTSRQSEIQKFIADGCKEALLEEKRRFCFLVDKHCSFASHIHYYHMQSAELLNSKLPRWQETCCDATKVPEKIMNMIEEIKTPISTPVSGTPQPSPMIERSKMIGKDYDTLSKYSPKMPPAPSVKAYTSPLIDMFNNPATAAQSSEKTNNSTANTGEDPSLQRSVSVATGLNMMKKQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLEENEAMSVPTPSPAPVRSISTVDLTEKSSVVIPPPDYLECLSMGATSDKKAGAPKVPSASTFRAPVSRPDATSTSPAMSS
IRESfinder result
IRESfinder score
0.399825319
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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