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mmu_circBach1_1845
Basic information of circular RNA
PanCircBase ID:
mmu_circBach1_1845
mm39_Chr. Position ID:
chr16|87512218|87519496|+
Gene name:
Bach1
Transcript:
ENSMUST00000026703.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
2,3,4
Exon/intron offsets:
0,3476,7071
Genomic length:
7278
Exon/intron sizes in nt:
294,1344,207
Flanking exon/introns:
chr16:87495944-87512218|chr16:87519496-87526324
Splice length:
1845
Other database IDs:
circBase: mmu_circ_0006436, CIRCpedia: MMU_CIRCpedia_32902, circAtlas: mmu-Bach1_0004
circBase: hsa_circ_0001181, circAtlas: hsa-BACH1_0001, CIRCpedia: HSA_CIRCpedia_35162
Human Ortholog IDs:
Mature spliced Sequence:
GTCGATGACAGTGAGAAGCATGCTTTCCACTGCTCTCCCTGGTCCCAGTTGCCACCCAGGATGTCTGTGAGTGAGAGTGCGGTATTTGCCTACGAGTCCTCTGTGCATAGCACCAACGTCTTGCTCAGCCTCAATGACCAGCGGAAGAAGGATGTCCTGTGTGATGTGACTGTCCTGGTGGAGGGCCAGCGGTTCCGAGCCCACCGCTCGGTGCTGGCTGCGTGCAGCAGCTACTTCCACTCGAGAATCGTAGGCCAGACTGACGCAGAGCTCACCGTCACACTGCCTGAAGAGGTAACGGTTAAAGGATTTGAACCTTTAATTCAGTTTGCCTACACTGCCAAACTCATTTTAAGTAAAGACAATGTTGACGAAGTGTGCAGGTGTGTGGAGTTTCTAAGCGTACACAATATCGAGGAATCCTGCTTCCAGTTTCTCAAGTTTAAGTTTTTGGACTCCACTTCAGAGCAGCAGGAATGCGCAAGAAAAAAATGCTTCTCCTCACACTGTCAGAAAGCAGATTTTAAATTTTCATTTTCAGAACAGAAAGATCTCGAAATCGATGAAGCAGATGAATTCTTGGAAAAGAAACGTGTTCAGACGCCTCAGTGTGACTCCCGCAGGTGTCAGGGCAGTGTAAAAGCATCCCCCCCTCTCCAGGACAGTGTCAGTCAGGCGTGCCAGTCCCTGTGCACGGACAAGGATGGAGCCCTGGCATTGCCATCTCTATGCCCCAAATACAGAAAGTTCCAGAAAGCGTTTGGAACTGACAAGATCCGAACTCTAGAATCCGGTGTCAGAGATGTCCACACTGCCTCTGTCCAGCCAAATGAGACCTCTGAACTTGAGTGTTTTGGGGGAGCGCAGGGCTGTGCAGATTTACACGTGATTTTAAAATGTGAAGGAATGAAGGCAGCCATGGAGAGTGAAGACACAGAGGGCCAGGATCCCTCCCCTCAGTGCCCTGCAGAGCAGCCCCAAGGGACACCCTTGCCTCAGGATTCTGCAGGACCTCACGGGCTCTACTCCTTGTCAGCCTTACACACATATGAGCAGTCAGGTGACGTGGCCTTTGCTGGGGTGCAGAGTAAAACCGTGAAGACAGAAAAGCCTCTGTCGAGGCCAGATGCCCAGGACGAGAAGCCATCGGAAAATCAGGATTTATATCTGAAGTCTAGCATGGGCCCTAAAGAAGACAGCAGCAGCCTTGCATCTGAGGATCGGAGTAGTGTGGAGCGAGAGGTGGCAGAGCACCTGGCCAAAGGCTTCTGGAGTGACATTTGCAGCACGGACTCGCCTTGCCAAATGCAGTTGTCGCCCACTGTGGCCAAAGACGGCCCAGAACAGGGCTACTCGCAAAGGCGATCTGAGTGTCCCTGGTTGGGTATCAGGATCAGTGAGAGCCCCGAGCCAGGCCAGCGGACTTTCACAACTCTCAGTTCCGTCAACTGCCCTTTTATCAGTACTCTGAGTTCCGAAGGCTGCTCAAGCAACTTGGAAATTGGAAACTACGATTATGTCTCGGAGCCTCAGCAGGAGCCTTGCCCGTATGCTTGTGTGATTAGCCTGGGAGATGACTCTGAGACGGACACGGAAGGTGACAGCGAGTCCTGTTCTGCCAGGGAGCAGGACTGTGAGGTGAAGCTGCCATTCAATGCCCAACGGATAATTTCGCTCTCACGAAATGATTTCCAATCCTTGTTGAAAATGCACAAACTGACCCCAGAGCAGCTCGACTGTATCCATGACATCCGCAGAAGGAGTAAGAACAGAATCGCCGCGCAACGCTGTCGCAAGAGGAAACTTGACTGTATCCAGAACCTTGAGTCGGAAATCGAGAAGCTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTAAGAACAGAATCGCCGCG
59.7
CTCACAGACATCCTGGGTGG
59.75
154
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTAAGAACAGAATCGCCGCG
59.7
CGCACTCTCACTCACAGACA
59.69
164
PCR template sequence:
TGACATCCGCAGAAGGAGTAAGAACAGAATCGCCGCGCAACGCTGTCGCAAGAGGAAACTTGACTGTATCCAGAACCTTGAGTCGGAAATCGAGAAGCTGGTCGATGACAGTGAGAAGCATGCTTTCCACTGCTCTCCCTGGTCCCAGTTGCCACCCAGGATGTCTGTGAGTGAGAGTGCGGTATTTGCCTACGAGTCCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
20
Interacting miRNAs (#binding sites)
mmu-miR-34c-5p(3), mmu-miR-34b-5p(3), mmu-miR-223-3p(2), mmu-miR-149-5p(2), mmu-miR-680(2), mmu-miR-697(2), mmu-miR-1904(2), mmu-miR-135a-5p(1), mmu-miR-34a-5p(1), mmu-miR-205-5p(1), mmu-miR-328-3p(1), mmu-miR-433-5p(1), mmu-miR-370-3p(1), mmu-miR-690(1), mmu-miR-377-3p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-300-3p(1), mmu-miR-673-5p(1), mmu-miR-323-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AATCGAGAAGCTGGTCGATGACAGTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBACH1_1845_ORF_1
0.8176
0.279156417
1
3630
ORF sequence:
ATGTCTGTGAGTGAGAGTGCGGTATTTGCCTACGAGTCCTCTGTGCATAGCACCAACGTCTTGCTCAGCCTCAATGACCAGCGGAAGAAGGATGTCCTGTGTGATGTGACTGTCCTGGTGGAGGGCCAGCGGTTCCGAGCCCACCGCTCGGTGCTGGCTGCGTGCAGCAGCTACTTCCACTCGAGAATCGTAGGCCAGACTGACGCAGAGCTCACCGTCACACTGCCTGAAGAGGTAACGGTTAAAGGATTTGAACCTTTAATTCAGTTTGCCTACACTGCCAAACTCATTTTAAGTAAAGACAATGTTGACGAAGTGTGCAGGTGTGTGGAGTTTCTAAGCGTACACAATATCGAGGAATCCTGCTTCCAGTTTCTCAAGTTTAAGTTTTTGGACTCCACTTCAGAGCAGCAGGAATGCGCAAGAAAAAAATGCTTCTCCTCACACTGTCAGAAAGCAGATTTTAAATTTTCATTTTCAGAACAGAAAGATCTCGAAATCGATGAAGCAGATGAATTCTTGGAAAAGAAACGTGTTCAGACGCCTCAGTGTGACTCCCGCAGGTGTCAGGGCAGTGTAAAAGCATCCCCCCCTCTCCAGGACAGTGTCAGTCAGGCGTGCCAGTCCCTGTGCACGGACAAGGATGGAGCCCTGGCATTGCCATCTCTATGCCCCAAATACAGAAAGTTCCAGAAAGCGTTTGGAACTGACAAGATCCGAACTCTAGAATCCGGTGTCAGAGATGTCCACACTGCCTCTGTCCAGCCAAATGAGACCTCTGAACTTGAGTGTTTTGGGGGAGCGCAGGGCTGTGCAGATTTACACGTGATTTTAAAATGTGAAGGAATGAAGGCAGCCATGGAGAGTGAAGACACAGAGGGCCAGGATCCCTCCCCTCAGTGCCCTGCAGAGCAGCCCCAAGGGACACCCTTGCCTCAGGATTCTGCAGGACCTCACGGGCTCTACTCCTTGTCAGCCTTACACACATATGAGCAGTCAGGTGACGTGGCCTTTGCTGGGGTGCAGAGTAAAACCGTGAAGACAGAAAAGCCTCTGTCGAGGCCAGATGCCCAGGACGAGAAGCCATCGGAAAATCAGGATTTATATCTGAAGTCTAGCATGGGCCCTAAAGAAGACAGCAGCAGCCTTGCATCTGAGGATCGGAGTAGTGTGGAGCGAGAGGTGGCAGAGCACCTGGCCAAAGGCTTCTGGAGTGACATTTGCAGCACGGACTCGCCTTGCCAAATGCAGTTGTCGCCCACTGTGGCCAAAGACGGCCCAGAACAGGGCTACTCGCAAAGGCGATCTGAGTGTCCCTGGTTGGGTATCAGGATCAGTGAGAGCCCCGAGCCAGGCCAGCGGACTTTCACAACTCTCAGTTCCGTCAACTGCCCTTTTATCAGTACTCTGAGTTCCGAAGGCTGCTCAAGCAACTTGGAAATTGGAAACTACGATTATGTCTCGGAGCCTCAGCAGGAGCCTTGCCCGTATGCTTGTGTGATTAGCCTGGGAGATGACTCTGAGACGGACACGGAAGGTGACAGCGAGTCCTGTTCTGCCAGGGAGCAGGACTGTGAGGTGAAGCTGCCATTCAATGCCCAACGGATAATTTCGCTCTCACGAAATGATTTCCAATCCTTGTTGAAAATGCACAAACTGACCCCAGAGCAGCTCGACTGTATCCATGACATCCGCAGAAGGAGTAAGAACAGAATCGCCGCGCAACGCTGTCGCAAGAGGAAACTTGACTGTATCCAGAACCTTGAGTCGGAAATCGAGAAGCTGGTCGATGACAGTGAGAAGCATGCTTTCCACTGCTCTCCCTGGTCCCAGTTGCCACCCAGGATGTCTGTGAGTGAGAGTGCGGTATTTGCCTACGAGTCCTCTGTGCATAGCACCAACGTCTTGCTCAGCCTCAATGACCAGCGGAAGAAGGATGTCCTGTGTGATGTGACTGTCCTGGTGGAGGGCCAGCGGTTCCGAGCCCACCGCTCGGTGCTGGCTGCGTGCAGCAGCTACTTCCACTCGAGAATCGTAGGCCAGACTGACGCAGAGCTCACCGTCACACTGCCTGAAGAGGTAACGGTTAAAGGATTTGAACCTTTAATTCAGTTTGCCTACACTGCCAAACTCATTTTAAGTAAAGACAATGTTGACGAAGTGTGCAGGTGTGTGGAGTTTCTAAGCGTACACAATATCGAGGAATCCTGCTTCCAGTTTCTCAAGTTTAAGTTTTTGGACTCCACTTCAGAGCAGCAGGAATGCGCAAGAAAAAAATGCTTCTCCTCACACTGTCAGAAAGCAGATTTTAAATTTTCATTTTCAGAACAGAAAGATCTCGAAATCGATGAAGCAGATGAATTCTTGGAAAAGAAACGTGTTCAGACGCCTCAGTGTGACTCCCGCAGGTGTCAGGGCAGTGTAAAAGCATCCCCCCCTCTCCAGGACAGTGTCAGTCAGGCGTGCCAGTCCCTGTGCACGGACAAGGATGGAGCCCTGGCATTGCCATCTCTATGCCCCAAATACAGAAAGTTCCAGAAAGCGTTTGGAACTGACAAGATCCGAACTCTAGAATCCGGTGTCAGAGATGTCCACACTGCCTCTGTCCAGCCAAATGAGACCTCTGAACTTGAGTGTTTTGGGGGAGCGCAGGGCTGTGCAGATTTACACGTGATTTTAAAATGTGAAGGAATGAAGGCAGCCATGGAGAGTGAAGACACAGAGGGCCAGGATCCCTCCCCTCAGTGCCCTGCAGAGCAGCCCCAAGGGACACCCTTGCCTCAGGATTCTGCAGGACCTCACGGGCTCTACTCCTTGTCAGCCTTACACACATATGAGCAGTCAGGTGACGTGGCCTTTGCTGGGGTGCAGAGTAAAACCGTGAAGACAGAAAAGCCTCTGTCGAGGCCAGATGCCCAGGACGAGAAGCCATCGGAAAATCAGGATTTATATCTGAAGTCTAGCATGGGCCCTAAAGAAGACAGCAGCAGCCTTGCATCTGAGGATCGGAGTAGTGTGGAGCGAGAGGTGGCAGAGCACCTGGCCAAAGGCTTCTGGAGTGACATTTGCAGCACGGACTCGCCTTGCCAAATGCAGTTGTCGCCCACTGTGGCCAAAGACGGCCCAGAACAGGGCTACTCGCAAAGGCGATCTGAGTGTCCCTGGTTGGGTATCAGGATCAGTGAGAGCCCCGAGCCAGGCCAGCGGACTTTCACAACTCTCAGTTCCGTCAACTGCCCTTTTATCAGTACTCTGAGTTCCGAAGGCTGCTCAAGCAACTTGGAAATTGGAAACTACGATTATGTCTCGGAGCCTCAGCAGGAGCCTTGCCCGTATGCTTGTGTGATTAGCCTGGGAGATGACTCTGAGACGGACACGGAAGGTGACAGCGAGTCCTGTTCTGCCAGGGAGCAGGACTGTGAGGTGAAGCTGCCATTCAATGCCCAACGGATAATTTCGCTCTCACGAAATGATTTCCAATCCTTGTTGAAAATGCACAAACTGACCCCAGAGCAGCTCGACTGTATCCATGACATCCGCAGAAGGAGTAAGAACAGAATCGCCGCGCAACGCTGTCGCAAGAGGAAACTTGACTGTATCCAGAACCTTGAGTCGGAAATCGAGAAGCTG
Peptide sequence:
MSVSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDSTSEQQECARKKCFSSHCQKADFKFSFSEQKDLEIDEADEFLEKKRVQTPQCDSRRCQGSVKASPPLQDSVSQACQSLCTDKDGALALPSLCPKYRKFQKAFGTDKIRTLESGVRDVHTASVQPNETSELECFGGAQGCADLHVILKCEGMKAAMESEDTEGQDPSPQCPAEQPQGTPLPQDSAGPHGLYSLSALHTYEQSGDVAFAGVQSKTVKTEKPLSRPDAQDEKPSENQDLYLKSSMGPKEDSSSLASEDRSSVEREVAEHLAKGFWSDICSTDSPCQMQLSPTVAKDGPEQGYSQRRSECPWLGIRISESPEPGQRTFTTLSSVNCPFISTLSSEGCSSNLEIGNYDYVSEPQQEPCPYACVISLGDDSETDTEGDSESCSAREQDCEVKLPFNAQRIISLSRNDFQSLLKMHKLTPEQLDCIHDIRRRSKNRIAAQRCRKRKLDCIQNLESEIEKLVDDSEKHAFHCSPWSQLPPRMSVSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDSTSEQQECARKKCFSSHCQKADFKFSFSEQKDLEIDEADEFLEKKRVQTPQCDSRRCQGSVKASPPLQDSVSQACQSLCTDKDGALALPSLCPKYRKFQKAFGTDKIRTLESGVRDVHTASVQPNETSELECFGGAQGCADLHVILKCEGMKAAMESEDTEGQDPSPQCPAEQPQGTPLPQDSAGPHGLYSLSALHTYEQSGDVAFAGVQSKTVKTEKPLSRPDAQDEKPSENQDLYLKSSMGPKEDSSSLASEDRSSVEREVAEHLAKGFWSDICSTDSPCQMQLSPTVAKDGPEQGYSQRRSECPWLGIRISESPEPGQRTFTTLSSVNCPFISTLSSEGCSSNLEIGNYDYVSEPQQEPCPYACVISLGDDSETDTEGDSESCSAREQDCEVKLPFNAQRIISLSRNDFQSLLKMHKLTPEQLDCIHDIRRRSKNRIAAQRCRKRKLDCIQNLESEIEKL
IRESfinder result
IRESfinder score
0.457436349
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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