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mmu_circBach1_1638
Basic information of circular RNA
PanCircBase ID:
mmu_circBach1_1638
mm39_Chr. Position ID:
chr16|87512218|87517038|+
Gene name:
Bach1
Transcript:
ENSMUST00000026703.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
2,3
Exon/intron offsets:
0,3476
Genomic length:
4820
Exon/intron sizes in nt:
294,1344
Flanking exon/introns:
chr16:87495944-87512218|chr16:87517038-87519289
Splice length:
1638
Other database IDs:
circAtlas: mmu-Bach1_0003
circBase: hsa_circ_0061394, circAtlas: hsa-BACH1_0003, CIRCpedia: HSA_CIRCpedia_35161
Human Ortholog IDs:
Mature spliced Sequence:
GTCGATGACAGTGAGAAGCATGCTTTCCACTGCTCTCCCTGGTCCCAGTTGCCACCCAGGATGTCTGTGAGTGAGAGTGCGGTATTTGCCTACGAGTCCTCTGTGCATAGCACCAACGTCTTGCTCAGCCTCAATGACCAGCGGAAGAAGGATGTCCTGTGTGATGTGACTGTCCTGGTGGAGGGCCAGCGGTTCCGAGCCCACCGCTCGGTGCTGGCTGCGTGCAGCAGCTACTTCCACTCGAGAATCGTAGGCCAGACTGACGCAGAGCTCACCGTCACACTGCCTGAAGAGGTAACGGTTAAAGGATTTGAACCTTTAATTCAGTTTGCCTACACTGCCAAACTCATTTTAAGTAAAGACAATGTTGACGAAGTGTGCAGGTGTGTGGAGTTTCTAAGCGTACACAATATCGAGGAATCCTGCTTCCAGTTTCTCAAGTTTAAGTTTTTGGACTCCACTTCAGAGCAGCAGGAATGCGCAAGAAAAAAATGCTTCTCCTCACACTGTCAGAAAGCAGATTTTAAATTTTCATTTTCAGAACAGAAAGATCTCGAAATCGATGAAGCAGATGAATTCTTGGAAAAGAAACGTGTTCAGACGCCTCAGTGTGACTCCCGCAGGTGTCAGGGCAGTGTAAAAGCATCCCCCCCTCTCCAGGACAGTGTCAGTCAGGCGTGCCAGTCCCTGTGCACGGACAAGGATGGAGCCCTGGCATTGCCATCTCTATGCCCCAAATACAGAAAGTTCCAGAAAGCGTTTGGAACTGACAAGATCCGAACTCTAGAATCCGGTGTCAGAGATGTCCACACTGCCTCTGTCCAGCCAAATGAGACCTCTGAACTTGAGTGTTTTGGGGGAGCGCAGGGCTGTGCAGATTTACACGTGATTTTAAAATGTGAAGGAATGAAGGCAGCCATGGAGAGTGAAGACACAGAGGGCCAGGATCCCTCCCCTCAGTGCCCTGCAGAGCAGCCCCAAGGGACACCCTTGCCTCAGGATTCTGCAGGACCTCACGGGCTCTACTCCTTGTCAGCCTTACACACATATGAGCAGTCAGGTGACGTGGCCTTTGCTGGGGTGCAGAGTAAAACCGTGAAGACAGAAAAGCCTCTGTCGAGGCCAGATGCCCAGGACGAGAAGCCATCGGAAAATCAGGATTTATATCTGAAGTCTAGCATGGGCCCTAAAGAAGACAGCAGCAGCCTTGCATCTGAGGATCGGAGTAGTGTGGAGCGAGAGGTGGCAGAGCACCTGGCCAAAGGCTTCTGGAGTGACATTTGCAGCACGGACTCGCCTTGCCAAATGCAGTTGTCGCCCACTGTGGCCAAAGACGGCCCAGAACAGGGCTACTCGCAAAGGCGATCTGAGTGTCCCTGGTTGGGTATCAGGATCAGTGAGAGCCCCGAGCCAGGCCAGCGGACTTTCACAACTCTCAGTTCCGTCAACTGCCCTTTTATCAGTACTCTGAGTTCCGAAGGCTGCTCAAGCAACTTGGAAATTGGAAACTACGATTATGTCTCGGAGCCTCAGCAGGAGCCTTGCCCGTATGCTTGTGTGATTAGCCTGGGAGATGACTCTGAGACGGACACGGAAGGTGACAGCGAGTCCTGTTCTGCCAGGGAGCAGGACTGTGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTTGCCCGTATGCTTGTGTG
59.83
CCAGGGAGAGCAGTGGAAAG
60.04
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCCCGTATGCTTGTGTGAT
60.04
CTCACAGACATCCTGGGTGG
59.75
167
PCR template sequence:
GCCTTGCCCGTATGCTTGTGTGATTAGCCTGGGAGATGACTCTGAGACGGACACGGAAGGTGACAGCGAGTCCTGTTCTGCCAGGGAGCAGGACTGTGAGGTCGATGACAGTGAGAAGCATGCTTTCCACTGCTCTCCCTGGTCCCAGTTGCCACCCAGGATGTCTGTGAGTGAGAGTGCGGTATTTGCCTACGAGTCCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
20
Interacting miRNAs (#binding sites)
mmu-miR-34c-5p(3), mmu-miR-34b-5p(3), mmu-miR-149-5p(2), mmu-miR-680(2), mmu-miR-697(2), mmu-miR-1904(2), mmu-miR-135a-5p(1), mmu-miR-223-3p(1), mmu-miR-34a-5p(1), mmu-miR-205-5p(1), mmu-miR-328-3p(1), mmu-miR-433-5p(1), mmu-miR-370-3p(1), mmu-miR-690(1), mmu-miR-377-3p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-300-3p(1), mmu-miR-673-5p(1), mmu-miR-323-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GCAGGACTGTGAGGTCGATGACAGTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBACH1_1638_ORF_1
0.8517
0.271568719
0.999999999
3216
ORF sequence:
ATGTCTGTGAGTGAGAGTGCGGTATTTGCCTACGAGTCCTCTGTGCATAGCACCAACGTCTTGCTCAGCCTCAATGACCAGCGGAAGAAGGATGTCCTGTGTGATGTGACTGTCCTGGTGGAGGGCCAGCGGTTCCGAGCCCACCGCTCGGTGCTGGCTGCGTGCAGCAGCTACTTCCACTCGAGAATCGTAGGCCAGACTGACGCAGAGCTCACCGTCACACTGCCTGAAGAGGTAACGGTTAAAGGATTTGAACCTTTAATTCAGTTTGCCTACACTGCCAAACTCATTTTAAGTAAAGACAATGTTGACGAAGTGTGCAGGTGTGTGGAGTTTCTAAGCGTACACAATATCGAGGAATCCTGCTTCCAGTTTCTCAAGTTTAAGTTTTTGGACTCCACTTCAGAGCAGCAGGAATGCGCAAGAAAAAAATGCTTCTCCTCACACTGTCAGAAAGCAGATTTTAAATTTTCATTTTCAGAACAGAAAGATCTCGAAATCGATGAAGCAGATGAATTCTTGGAAAAGAAACGTGTTCAGACGCCTCAGTGTGACTCCCGCAGGTGTCAGGGCAGTGTAAAAGCATCCCCCCCTCTCCAGGACAGTGTCAGTCAGGCGTGCCAGTCCCTGTGCACGGACAAGGATGGAGCCCTGGCATTGCCATCTCTATGCCCCAAATACAGAAAGTTCCAGAAAGCGTTTGGAACTGACAAGATCCGAACTCTAGAATCCGGTGTCAGAGATGTCCACACTGCCTCTGTCCAGCCAAATGAGACCTCTGAACTTGAGTGTTTTGGGGGAGCGCAGGGCTGTGCAGATTTACACGTGATTTTAAAATGTGAAGGAATGAAGGCAGCCATGGAGAGTGAAGACACAGAGGGCCAGGATCCCTCCCCTCAGTGCCCTGCAGAGCAGCCCCAAGGGACACCCTTGCCTCAGGATTCTGCAGGACCTCACGGGCTCTACTCCTTGTCAGCCTTACACACATATGAGCAGTCAGGTGACGTGGCCTTTGCTGGGGTGCAGAGTAAAACCGTGAAGACAGAAAAGCCTCTGTCGAGGCCAGATGCCCAGGACGAGAAGCCATCGGAAAATCAGGATTTATATCTGAAGTCTAGCATGGGCCCTAAAGAAGACAGCAGCAGCCTTGCATCTGAGGATCGGAGTAGTGTGGAGCGAGAGGTGGCAGAGCACCTGGCCAAAGGCTTCTGGAGTGACATTTGCAGCACGGACTCGCCTTGCCAAATGCAGTTGTCGCCCACTGTGGCCAAAGACGGCCCAGAACAGGGCTACTCGCAAAGGCGATCTGAGTGTCCCTGGTTGGGTATCAGGATCAGTGAGAGCCCCGAGCCAGGCCAGCGGACTTTCACAACTCTCAGTTCCGTCAACTGCCCTTTTATCAGTACTCTGAGTTCCGAAGGCTGCTCAAGCAACTTGGAAATTGGAAACTACGATTATGTCTCGGAGCCTCAGCAGGAGCCTTGCCCGTATGCTTGTGTGATTAGCCTGGGAGATGACTCTGAGACGGACACGGAAGGTGACAGCGAGTCCTGTTCTGCCAGGGAGCAGGACTGTGAGGTCGATGACAGTGAGAAGCATGCTTTCCACTGCTCTCCCTGGTCCCAGTTGCCACCCAGGATGTCTGTGAGTGAGAGTGCGGTATTTGCCTACGAGTCCTCTGTGCATAGCACCAACGTCTTGCTCAGCCTCAATGACCAGCGGAAGAAGGATGTCCTGTGTGATGTGACTGTCCTGGTGGAGGGCCAGCGGTTCCGAGCCCACCGCTCGGTGCTGGCTGCGTGCAGCAGCTACTTCCACTCGAGAATCGTAGGCCAGACTGACGCAGAGCTCACCGTCACACTGCCTGAAGAGGTAACGGTTAAAGGATTTGAACCTTTAATTCAGTTTGCCTACACTGCCAAACTCATTTTAAGTAAAGACAATGTTGACGAAGTGTGCAGGTGTGTGGAGTTTCTAAGCGTACACAATATCGAGGAATCCTGCTTCCAGTTTCTCAAGTTTAAGTTTTTGGACTCCACTTCAGAGCAGCAGGAATGCGCAAGAAAAAAATGCTTCTCCTCACACTGTCAGAAAGCAGATTTTAAATTTTCATTTTCAGAACAGAAAGATCTCGAAATCGATGAAGCAGATGAATTCTTGGAAAAGAAACGTGTTCAGACGCCTCAGTGTGACTCCCGCAGGTGTCAGGGCAGTGTAAAAGCATCCCCCCCTCTCCAGGACAGTGTCAGTCAGGCGTGCCAGTCCCTGTGCACGGACAAGGATGGAGCCCTGGCATTGCCATCTCTATGCCCCAAATACAGAAAGTTCCAGAAAGCGTTTGGAACTGACAAGATCCGAACTCTAGAATCCGGTGTCAGAGATGTCCACACTGCCTCTGTCCAGCCAAATGAGACCTCTGAACTTGAGTGTTTTGGGGGAGCGCAGGGCTGTGCAGATTTACACGTGATTTTAAAATGTGAAGGAATGAAGGCAGCCATGGAGAGTGAAGACACAGAGGGCCAGGATCCCTCCCCTCAGTGCCCTGCAGAGCAGCCCCAAGGGACACCCTTGCCTCAGGATTCTGCAGGACCTCACGGGCTCTACTCCTTGTCAGCCTTACACACATATGAGCAGTCAGGTGACGTGGCCTTTGCTGGGGTGCAGAGTAAAACCGTGAAGACAGAAAAGCCTCTGTCGAGGCCAGATGCCCAGGACGAGAAGCCATCGGAAAATCAGGATTTATATCTGAAGTCTAGCATGGGCCCTAAAGAAGACAGCAGCAGCCTTGCATCTGAGGATCGGAGTAGTGTGGAGCGAGAGGTGGCAGAGCACCTGGCCAAAGGCTTCTGGAGTGACATTTGCAGCACGGACTCGCCTTGCCAAATGCAGTTGTCGCCCACTGTGGCCAAAGACGGCCCAGAACAGGGCTACTCGCAAAGGCGATCTGAGTGTCCCTGGTTGGGTATCAGGATCAGTGAGAGCCCCGAGCCAGGCCAGCGGACTTTCACAACTCTCAGTTCCGTCAACTGCCCTTTTATCAGTACTCTGAGTTCCGAAGGCTGCTCAAGCAACTTGGAAATTGGAAACTACGATTATGTCTCGGAGCCTCAGCAGGAGCCTTGCCCGTATGCTTGTGTGATTAGCCTGGGAGATGACTCTGAGACGGACACGGAAGGTGACAGCGAGTCCTGTTCTGCCAGGGAGCAGGACTGTGAG
Peptide sequence:
MSVSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDSTSEQQECARKKCFSSHCQKADFKFSFSEQKDLEIDEADEFLEKKRVQTPQCDSRRCQGSVKASPPLQDSVSQACQSLCTDKDGALALPSLCPKYRKFQKAFGTDKIRTLESGVRDVHTASVQPNETSELECFGGAQGCADLHVILKCEGMKAAMESEDTEGQDPSPQCPAEQPQGTPLPQDSAGPHGLYSLSALHTYEQSGDVAFAGVQSKTVKTEKPLSRPDAQDEKPSENQDLYLKSSMGPKEDSSSLASEDRSSVEREVAEHLAKGFWSDICSTDSPCQMQLSPTVAKDGPEQGYSQRRSECPWLGIRISESPEPGQRTFTTLSSVNCPFISTLSSEGCSSNLEIGNYDYVSEPQQEPCPYACVISLGDDSETDTEGDSESCSAREQDCEVDDSEKHAFHCSPWSQLPPRMSVSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDSTSEQQECARKKCFSSHCQKADFKFSFSEQKDLEIDEADEFLEKKRVQTPQCDSRRCQGSVKASPPLQDSVSQACQSLCTDKDGALALPSLCPKYRKFQKAFGTDKIRTLESGVRDVHTASVQPNETSELECFGGAQGCADLHVILKCEGMKAAMESEDTEGQDPSPQCPAEQPQGTPLPQDSAGPHGLYSLSALHTYEQSGDVAFAGVQSKTVKTEKPLSRPDAQDEKPSENQDLYLKSSMGPKEDSSSLASEDRSSVEREVAEHLAKGFWSDICSTDSPCQMQLSPTVAKDGPEQGYSQRRSECPWLGIRISESPEPGQRTFTTLSSVNCPFISTLSSEGCSSNLEIGNYDYVSEPQQEPCPYACVISLGDDSETDTEGDSESCSAREQDCE
IRESfinder result
IRESfinder score
0.480436831
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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