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mmu_circBace2_319
Basic information of circular RNA
PanCircBase ID:
mmu_circBace2_319
mm39_Chr. Position ID:
chr16|97223049|97225858|+
Gene name:
Bace2
Transcript:
ENSMUST00000047275.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
7,8
Exon/intron offsets:
0,2640
Genomic length:
2809
Exon/intron sizes in nt:
150,169
Flanking exon/introns:
chr16:97216380-97223049|chr16:97225858-97237841
Splice length:
319
Other database IDs:
circBase: hsa_circ_0116096, circAtlas: hsa-BACE2_0004, CIRCpedia: HSA_CIRCpedia_35576
Human Ortholog IDs:
Mature spliced Sequence:
ATTCCAGAGTTTTCTGATGGCTTCTGGACAGGGGCCCAGCTGGCATGCTGGACAAATTCTGAAACGCCATGGGCATATTTCCCTAAGATTTCTATCTACCTGAGAGATGAGAATGCCAGTCGCTCCTTCCGGATCACCATTCTCCCACAGCTCTACATTCAGCCCATGATGGGAGCTGGTTTCAATTATGAATGCTACCGTTTTGGTATCTCCTCTTCCACAAATGCGCTGGTGATTGGTGCGACCGTGATGGAAGGCTTCTACGTGGTCTTTGACAGAGCTCAGAGGAGGGTGGGCTTTGCAGTGAGTCCCTGTGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAATGCGCTGGTGATTGGTG
59.76
AATTTGTCCAGCATGCCAGC
59.75
156
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAAATGCGCTGGTGATTGGT
59.76
AATTTGTCCAGCATGCCAGC
59.75
157
PCR template sequence:
ACAAATGCGCTGGTGATTGGTGCGACCGTGATGGAAGGCTTCTACGTGGTCTTTGACAGAGCTCAGAGGAGGGTGGGCTTTGCAGTGAGTCCCTGTGCAGATTCCAGAGTTTTCTGATGGCTTCTGGACAGGGGCCCAGCTGGCATGCTGGACAAATTCTGAAACGCCATGGGCATATTTCCCTAAGATTTCTATCTACC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-339-5p(1), mmu-miR-705(1)
siRNAs for circular RNA silencing
Junction sequence
AGTCCCTGTGCAGATTCCAGAGTTTT
siRNA sets
AAAACTCTGGAATCTGCAC, AAACTCTGGAATCTGCACA, AACTCTGGAATCTGCACAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBACE2_319_ORF_1
0.7642
0.151962024
0.121146845
171
ORF sequence:
ATGATGGGAGCTGGTTTCAATTATGAATGCTACCGTTTTGGTATCTCCTCTTCCACAAATGCGCTGGTGATTGGTGCGACCGTGATGGAAGGCTTCTACGTGGTCTTTGACAGAGCTCAGAGGAGGGTGGGCTTTGCAGTGAGTCCCTGTGCAGATTCCAGAGTTTTCTGA
Peptide sequence:
MMGAGFNYECYRFGISSSTNALVIGATVMEGFYVVFDRAQRRVGFAVSPCADSRVF
IRESfinder result
IRESfinder score
0.486153928
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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