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mmu_circB830012L14Rik_565
Basic information of circular RNA
PanCircBase ID:
mmu_circB830012L14Rik_565
mm39_Chr. Position ID:
chr12|109651552|109659393|+
Gene name:
B830012L14Rik
Transcript:
ENSMUST00000238801.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
8,9,10,11,12,13,14
Exon/intron offsets:
0,1279,1831,2549,3965,4844,7747
Genomic length:
7841
Exon/intron sizes in nt:
82,78,114,74,76,47,94
Flanking exon/introns:
chr12:109651079-109651552|chr12:109659393-109662488
Splice length:
565
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
AATGTGTGCTCCTAGGCTGATGTCTGCATTTTCTATGATCAGCAGTGGAACATTTGCACCTCTGCATTGAACATGGGGCAGTGTGGACCATCTAATTAGAGGACCCTCCAATGGTCAAGCACTCTATTTGCACCAGCTTGAGGAGACGAACAAGACCAGTAATGGACTTTCCCAAGGTATCTATTCACCTCCAATGGCTTCCAGCCCTTCAGTTGCTCGTGATGATGTGAGATCTGCCCAAACTTCTCCTCATAGTTTTGATGGTTTGATGAAGGTGTTTGCTGCCTGGAGGAGGTCTCCATGTCTAGGATCTCCGCTGATGTCATGGGTGGTGCTGGGCTGACCAGTTGAAGGAACGATGTTACTGAAGAGTCTGCCATGGTCAAGGGCTCTGTGCTTTCCCAAGAAGAAGTTCATGTTGAATAGTAGAGCAATGGGAAGAGAGTTCCTTATTCACACCTGGGGTTTAAGTACAGCGGATGCATGCAGCTCCTCTCATCATGGATACTTCAGGATGAAGGTCACAACACTCACTGCATGGCTGGGCCAGTACAGACCTCAATGA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCATGCAGCTCCTCTCATCA
60.18
CACTGCCCCATGTTCAATGC
60.11
167
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCATGCAGCTCCTCTCATC
60.18
CACTGCCCCATGTTCAATGC
60.11
168
PCR template sequence:
TTTAAGTACAGCGGATGCATGCAGCTCCTCTCATCATGGATACTTCAGGATGAAGGTCACAACACTCACTGCATGGCTGGGCCAGTACAGACCTCAATGAAATGTGTGCTCCTAGGCTGATGTCTGCATTTTCTATGATCAGCAGTGGAACATTTGCACCTCTGCATTGAACATGGGGCAGTGTGGACCATCTAATTAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
12
Interacting miRNAs (#binding sites)
mmu-miR-19b-3p(2), mmu-miR-19a-3p(2), mmu-miR-375-3p(1), mmu-miR-205-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-298-5p(1), mmu-miR-758-3p(1), mmu-miR-324-3p(1), mmu-miR-802-5p(1), mmu-miR-193b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CAGACCTCAATGAAATGTGTGCTCCT
siRNA sets
ACACATTTCATTGAGGTCT, GAGCACACATTTCATTGAG, CACACATTTCATTGAGGTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCB830012L14RIK_565_ORF_1
0.7054
-0.106914203
0.052099597
207
ORF sequence:
ATGTTACTGAAGAGTCTGCCATGGTCAAGGGCTCTGTGCTTTCCCAAGAAGAAGTTCATGTTGAATAGTAGAGCAATGGGAAGAGAGTTCCTTATTCACACCTGGGGTTTAAGTACAGCGGATGCATGCAGCTCCTCTCATCATGGATACTTCAGGATGAAGGTCACAACACTCACTGCATGGCTGGGCCAGTACAGACCTCAATGA
Peptide sequence:
MLLKSLPWSRALCFPKKKFMLNSRAMGREFLIHTWGLSTADACSSSHHGYFRMKVTTLTAWLGQYRPQ
IRESfinder result
IRESfinder score
0.536731035
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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