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mmu_circB830012L14Rik_469
Basic information of circular RNA
PanCircBase ID:
mmu_circB830012L14Rik_469
mm39_Chr. Position ID:
chr12|109650132|109654175|+
Gene name:
B830012L14Rik
Transcript:
ENSMUST00000238801.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
6,7,8,9,10,11
Exon/intron offsets:
0,906,1420,2699,3251,3969
Genomic length:
4043
Exon/intron sizes in nt:
80,41,82,78,114,74
Flanking exon/introns:
chr12:109649294-109650132|chr12:109654175-109655517
Splice length:
469
Other database IDs:
circBase: mmu_circ_0003732
Human Ortholog IDs:
Mature spliced Sequence:
AGGCTGATTGACTGATGTCATTGCAAAAGTTTCCTGTCATAGAGAGTTCCTCTGATGTCCCTTCAGCACCACTACAACTGAGCTGACTGCAGGATTTCCTATGTTTAATGACTGCCTCAAGAATGTGTGCTCCTAGGCTGATGTCTGCATTTTCTATGATCAGCAGTGGAACATTTGCACCTCTGCATTGAACATGGGGCAGTGTGGACCATCTAATTAGAGGACCCTCCAATGGTCAAGCACTCTATTTGCACCAGCTTGAGGAGACGAACAAGACCAGTAATGGACTTTCCCAAGGTATCTATTCACCTCCAATGGCTTCCAGCCCTTCAGTTGCTCGTGATGATGTGAGATCTGCCCAAACTTCTCCTCATAGTTTTGATGGTTTGATGAAGGTGTTTGCTGCCTGGAGGAGGTCTCCATGTCTAGGATCTCCGCTGATGTCATGGGTGGTGCTGGGCTGACCAGT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAAGGTGTTTGCTGCCTGGA
60.82
TCCTGCAGTCAGCTCAGTTG
59.97
172
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGGTGTTTGCTGCCTGGAG
60.83
TCCTGCAGTCAGCTCAGTTG
59.97
171
PCR template sequence:
CTCATAGTTTTGATGGTTTGATGAAGGTGTTTGCTGCCTGGAGGAGGTCTCCATGTCTAGGATCTCCGCTGATGTCATGGGTGGTGCTGGGCTGACCAGTAGGCTGATTGACTGATGTCATTGCAAAAGTTTCCTGTCATAGAGAGTTCCTCTGATGTCCCTTCAGCACCACTACAACTGAGCTGACTGCAGGATTTCCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-19b-3p(2), mmu-miR-19a-3p(2), mmu-miR-375-3p(1), mmu-miR-205-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-298-5p(1), mmu-miR-324-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGGGCTGACCAGTAGGCTGATTGACT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.518694605
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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