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mmu_circB830012L14Rik_1070
Basic information of circular RNA
PanCircBase ID:
mmu_circB830012L14Rik_1070
mm39_Chr. Position ID:
chr12|109647626|109659393|+
Gene name:
B830012L14Rik
Transcript:
ENSMUST00000238801.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
12
Exon/intron indexes:
3,4,5,6,7,8,9,10,11,12,13,14
Exon/intron offsets:
0,841,1541,2506,3412,3926,5205,5757,6475,7891,8770,11673
Genomic length:
11767
Exon/intron sizes in nt:
128,129,127,80,41,82,78,114,74,76,47,94
Flanking exon/introns:
chr12:109647003-109647626|chr12:109659393-109662488
Splice length:
1070
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
AGAGCTGACCCAAGTGATATGAGAAGTTTGCTGTGATGGACAGTTTCTGGGTGCTTTGCCAACAATCCAGAGTACATGGTGACATGTCAACTCCAGCTGTGATCCTCCTGTGTGGCACTGACTTACAGAAATGGCGACCCAACAGATGGTACCAGCATGCTGAGATATAGAACCACCCTTGTATCACCACTGTGACATCTCAGAGCTTTGCCGACCAAGAGGCAACATCTTGATCTTCCTTGCCCACCAGCTTGCAGGAAGGTGACTCTAGTGATGGTAGAGTTATGGATAATGGACAATTCCTGGGATGCCATGGCAACAGTCCACAGCCCATGGTGACTTGTCAACTCCAGCTCTGTTCCTTCTGTGCGCACCTGCTTATAGAGGCTGATTGACTGATGTCATTGCAAAAGTTTCCTGTCATAGAGAGTTCCTCTGATGTCCCTTCAGCACCACTACAACTGAGCTGACTGCAGGATTTCCTATGTTTAATGACTGCCTCAAGAATGTGTGCTCCTAGGCTGATGTCTGCATTTTCTATGATCAGCAGTGGAACATTTGCACCTCTGCATTGAACATGGGGCAGTGTGGACCATCTAATTAGAGGACCCTCCAATGGTCAAGCACTCTATTTGCACCAGCTTGAGGAGACGAACAAGACCAGTAATGGACTTTCCCAAGGTATCTATTCACCTCCAATGGCTTCCAGCCCTTCAGTTGCTCGTGATGATGTGAGATCTGCCCAAACTTCTCCTCATAGTTTTGATGGTTTGATGAAGGTGTTTGCTGCCTGGAGGAGGTCTCCATGTCTAGGATCTCCGCTGATGTCATGGGTGGTGCTGGGCTGACCAGTTGAAGGAACGATGTTACTGAAGAGTCTGCCATGGTCAAGGGCTCTGTGCTTTCCCAAGAAGAAGTTCATGTTGAATAGTAGAGCAATGGGAAGAGAGTTCCTTATTCACACCTGGGGTTTAAGTACAGCGGATGCATGCAGCTCCTCTCATCATGGATACTTCAGGATGAAGGTCACAACACTCACTGCATGGCTGGGCCAGTACAGACCTCAATGA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCATGCAGCTCCTCTCATCA
60.18
GGCAAAGCACCCAGAAACTG
59.97
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCATGCAGCTCCTCTCATC
60.18
GGCAAAGCACCCAGAAACTG
59.97
145
PCR template sequence:
TTTAAGTACAGCGGATGCATGCAGCTCCTCTCATCATGGATACTTCAGGATGAAGGTCACAACACTCACTGCATGGCTGGGCCAGTACAGACCTCAATGAAGAGCTGACCCAAGTGATATGAGAAGTTTGCTGTGATGGACAGTTTCTGGGTGCTTTGCCAACAATCCAGAGTACATGGTGACATGTCAACTCCAGCTGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
18
Interacting miRNAs (#binding sites)
mmu-miR-19b-3p(2), mmu-miR-19a-3p(2), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-375-3p(1), mmu-miR-205-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-298-5p(1), mmu-miR-324-5p(1), mmu-miR-381-3p(1), mmu-miR-758-3p(1), mmu-miR-324-3p(1), mmu-miR-224-5p(1), mmu-miR-802-5p(1), mmu-miR-673-5p(1), mmu-miR-193b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CAGACCTCAATGAAGAGCTGACCCAA
siRNA sets
TTGGGTCAGCTCTTCATTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCB830012L14RIK_1070_ORF_2
0.7054
-0.106914203
0.050946429
207
ORF sequence:
ATGTTACTGAAGAGTCTGCCATGGTCAAGGGCTCTGTGCTTTCCCAAGAAGAAGTTCATGTTGAATAGTAGAGCAATGGGAAGAGAGTTCCTTATTCACACCTGGGGTTTAAGTACAGCGGATGCATGCAGCTCCTCTCATCATGGATACTTCAGGATGAAGGTCACAACACTCACTGCATGGCTGGGCCAGTACAGACCTCAATGA
Peptide sequence:
MLLKSLPWSRALCFPKKKFMLNSRAMGREFLIHTWGLSTADACSSSHHGYFRMKVTTLTAWLGQYRPQ
IRESfinder result
IRESfinder score
0.526224664
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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