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mmu_circAzin1_371
Basic information of circular RNA
PanCircBase ID:
mmu_circAzin1_371
mm39_Chr. Position ID:
chr15|38500541|38501844|-
Gene name:
Azin1
Transcript:
ENSMUST00000065308.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
4,3
Exon/intron offsets:
0,1106
Genomic length:
1303
Exon/intron sizes in nt:
1,74,197
Flanking exon/introns:
chr15:38499085-38500541|chr15:38501844-38514716
Splice length:
371
Other database IDs:
circAtlas: mmu-Azin1_0017
circBase: hsa_circ_0004982, circAtlas: hsa-AZIN1_0013, CIRCpedia: HSA_CIRCpedia_59754
Human Ortholog IDs:
Mature spliced Sequence:
TTTGTTGCATATTCTAAGGACCCAGACATAGGCTTGGTGGCCCGTCTCTTGTTTTTCCTGGTTTATGACTTTCGGCTTTGTGGAATACGGCTGAGATGAAAGGATTTATTGACGATGCGAACTACTCCGTTGGCCTGTTGGATGAAGGAACAAACCTTGGAAATGTTATTGATAACTATGTTTATGAACATACCCTGACAGGAAAAAATGCATTTTTTGTGGGGGATCTTGGGAAGATCGTGAAGAAGCACAGTCAGTGGCAGACCGTGGTGGCTCAGATAAAGCCGTTTTACACGGTGAAGTGCAACTCCACTCCAGCCGTGCTTGAGATCTTGGCAGCTCTTGGAACTGGGTTTGCTTGTTCCAGCAAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTTGAGATCTTGGCAGCT
59.67
CAGCCGTATTCCACAAAGCC
59.55
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCCGTGCTTGAGATCTTGG
60.39
CAGCCGTATTCCACAAAGCC
59.55
148
PCR template sequence:
GGCTCAGATAAAGCCGTTTTACACGGTGAAGTGCAACTCCACTCCAGCCGTGCTTGAGATCTTGGCAGCTCTTGGAACTGGGTTTGCTTGTTCCAGCAAATTTGTTGCATATTCTAAGGACCCAGACATAGGCTTGGTGGCCCGTCTCTTGTTTTTCCTGGTTTATGACTTTCGGCTTTGTGGAATACGGCTGAGATGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-205-5p(1), mmu-miR-22-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTGTTCCAGCAAATTTGTTGCATATT
siRNA sets
CAACAAATTTGCTGGAACA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCAZIN1_371_ORF_1
0.8801
0.156691774
0.431181534
375
ORF sequence:
ATGAAAGGATTTATTGACGATGCGAACTACTCCGTTGGCCTGTTGGATGAAGGAACAAACCTTGGAAATGTTATTGATAACTATGTTTATGAACATACCCTGACAGGAAAAAATGCATTTTTTGTGGGGGATCTTGGGAAGATCGTGAAGAAGCACAGTCAGTGGCAGACCGTGGTGGCTCAGATAAAGCCGTTTTACACGGTGAAGTGCAACTCCACTCCAGCCGTGCTTGAGATCTTGGCAGCTCTTGGAACTGGGTTTGCTTGTTCCAGCAAATTTGTTGCATATTCTAAGGACCCAGACATAGGCTTGGTGGCCCGTCTCTTGTTTTTCCTGGTTTATGACTTTCGGCTTTGTGGAATACGGCTGAGATGA
Peptide sequence:
MKGFIDDANYSVGLLDEGTNLGNVIDNYVYEHTLTGKNAFFVGDLGKIVKKHSQWQTVVAQIKPFYTVKCNSTPAVLEILAALGTGFACSSKFVAYSKDPDIGLVARLLFFLVYDFRLCGIRLR
IRESfinder result
IRESfinder score
0.626020045
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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