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mmu_circAW554918_1288
Basic information of circular RNA
PanCircBase ID:
mmu_circAW554918_1288
mm39_Chr. Position ID:
chr18|25307743|25478019|+
Gene name:
AW554918
Transcript:
ENSMUST00000097643.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
2,3,4,5,6,7,8
Exon/intron offsets:
0,656,7368,29174,115252,165027,170177
Genomic length:
170276
Exon/intron sizes in nt:
36,143,95,116,128,671,99
Flanking exon/introns:
chr18:25302143-25307743|chr18:25478019-25532982
Splice length:
1288
Other database IDs:
CIRCpedia: MMU_CIRCpedia_36971, circAtlas: mmu-AW554918_0021
Human Ortholog IDs:
Mature spliced Sequence:
TTTCTGATGAAGACCAGTCGGTGGCTTACGTTCCAGGAATCTCCACAGAAGGAAATACAAGATCAAGAGTCAAGTTGATAAATCCAAAAGTTGATGTTAAAGTTAAGGCTTCCAGGGTGACTGATGCTTCCGTCTCCATGGAGTCTTTAAAAGGTGCTGGAGATTCAGTAGCCGAACAGAATTTCTGCAAGAGAGGAATGAAGAGTGCATCATTGAAAGATTTATGCCTTGAAGACAAAAGACGAATTGCCAACTTAATTAAAGAACTGGCCAGAGTAAGTGAAGAAAAGGAGGTGACAGAGGAGCGGCTGAAAACTGAGCAGGAGTCCTTTGAGAAGAAGATCCGGCAGTTAGAGGAGCAGAATGAACTGATCATCAAAGAAAGGGAAGCTCTTCAGCTACAGTATAGAGAATGCCAAGAACTTCTAAGTCTCTACCAGAAGTACCTATCGGAGCAGCAAGAGAAGCTTACCCTGTCCCTCTCAGAGCTTGGAGCTGCTAGAGCGCAGGAGCAGCAGATAACCAAGAAGAAAAACACTCCCCAGTGTTCATTGATGGACCTGGATGGTTCCTTTCTGAGTGTAGCCAGACCACAAAACTACGGTCAGACCAAGGCGAGGCCTAAGTCAGCAAACCAGGTCTCAGAATCGTTTACAGAATTAAGGAATAATTCCTTGAGGCCAATAACACTTCATCATCCCAAAGAAGATTTAGAGAGGATGTCAACAAAAACCAGAACATGTACTTATGAATCTCTGGGGAGAAGACTAATAAATGCAGCCCCAATAGAGAAATCTCTCCCAGTAGAGTTGAAGATAAAGGAATACCCAAACCTTCCACCTACTCCATCTAGTCAGTACTGTGGTCATAAATGCTCTGAAAGTGGAGCTTATGTTCATGAGAACTATCACCCTACAAACATGGCCCCTCAATGTTGTAAGACACATCCAGAATCATGCAGTCATTGTAGGATTCCCTGGGCATCTCAAATGCATGATCGAGTGATACTGCAACCCCGAGAAACTGACATTGAAAAACAACTCTCAGAAGATCGAAGGCAACAGCTGATGCTTCAGAAAATGGAACTGGAAATTGAAAAGGAACGCCTTCAGCATCTCCTGGCCCAACAAGAGACGAAGCTTCTCCTTAAACAGCAGCAGCTGCACCAATCCCGACTAGATTACAATTGGTTAAGAACTCAAGCTATGTTTAAATCTCGAGAGCTGGTTGCCGATAAAGAGTTTCCTAAACCTGATCTGGATATGAATGGGAGTGTCTCTGGACCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AATCTCGAGAGCTGGTTGCC
60.11
TGATCTTGTATTTCCTTCTGTGGAGA
59.79
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AATCTCGAGAGCTGGTTGCC
60.11
TGATCTTGTATTTCCTTCTGTGGA
57.63
141
PCR template sequence:
GGTTAAGAACTCAAGCTATGTTTAAATCTCGAGAGCTGGTTGCCGATAAAGAGTTTCCTAAACCTGATCTGGATATGAATGGGAGTGTCTCTGGACCAAGTTTCTGATGAAGACCAGTCGGTGGCTTACGTTCCAGGAATCTCCACAGAAGGAAATACAAGATCAAGAGTCAAGTTGATAAATCCAAAAGTTGATGTTAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-223-3p(1), mmu-miR-101a-3p(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
TCTCTGGACCAAGTTTCTGATGAAGA
siRNA sets
CATCAGAAACTTGGTCCAG, TTCATCAGAAACTTGGTCC, TCATCAGAAACTTGGTCCA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCAW554918_1288_ORF_1
0.9511
0.126967781
0.998379612
1308
ORF sequence:
ATGGGAGTGTCTCTGGACCAAGTTTCTGATGAAGACCAGTCGGTGGCTTACGTTCCAGGAATCTCCACAGAAGGAAATACAAGATCAAGAGTCAAGTTGATAAATCCAAAAGTTGATGTTAAAGTTAAGGCTTCCAGGGTGACTGATGCTTCCGTCTCCATGGAGTCTTTAAAAGGTGCTGGAGATTCAGTAGCCGAACAGAATTTCTGCAAGAGAGGAATGAAGAGTGCATCATTGAAAGATTTATGCCTTGAAGACAAAAGACGAATTGCCAACTTAATTAAAGAACTGGCCAGAGTAAGTGAAGAAAAGGAGGTGACAGAGGAGCGGCTGAAAACTGAGCAGGAGTCCTTTGAGAAGAAGATCCGGCAGTTAGAGGAGCAGAATGAACTGATCATCAAAGAAAGGGAAGCTCTTCAGCTACAGTATAGAGAATGCCAAGAACTTCTAAGTCTCTACCAGAAGTACCTATCGGAGCAGCAAGAGAAGCTTACCCTGTCCCTCTCAGAGCTTGGAGCTGCTAGAGCGCAGGAGCAGCAGATAACCAAGAAGAAAAACACTCCCCAGTGTTCATTGATGGACCTGGATGGTTCCTTTCTGAGTGTAGCCAGACCACAAAACTACGGTCAGACCAAGGCGAGGCCTAAGTCAGCAAACCAGGTCTCAGAATCGTTTACAGAATTAAGGAATAATTCCTTGAGGCCAATAACACTTCATCATCCCAAAGAAGATTTAGAGAGGATGTCAACAAAAACCAGAACATGTACTTATGAATCTCTGGGGAGAAGACTAATAAATGCAGCCCCAATAGAGAAATCTCTCCCAGTAGAGTTGAAGATAAAGGAATACCCAAACCTTCCACCTACTCCATCTAGTCAGTACTGTGGTCATAAATGCTCTGAAAGTGGAGCTTATGTTCATGAGAACTATCACCCTACAAACATGGCCCCTCAATGTTGTAAGACACATCCAGAATCATGCAGTCATTGTAGGATTCCCTGGGCATCTCAAATGCATGATCGAGTGATACTGCAACCCCGAGAAACTGACATTGAAAAACAACTCTCAGAAGATCGAAGGCAACAGCTGATGCTTCAGAAAATGGAACTGGAAATTGAAAAGGAACGCCTTCAGCATCTCCTGGCCCAACAAGAGACGAAGCTTCTCCTTAAACAGCAGCAGCTGCACCAATCCCGACTAGATTACAATTGGTTAAGAACTCAAGCTATGTTTAAATCTCGAGAGCTGGTTGCCGATAAAGAGTTTCCTAAACCTGATCTGGATATGAATGGGAGTGTCTCTGGACCA
Peptide sequence:
MGVSLDQVSDEDQSVAYVPGISTEGNTRSRVKLINPKVDVKVKASRVTDASVSMESLKGAGDSVAEQNFCKRGMKSASLKDLCLEDKRRIANLIKELARVSEEKEVTEERLKTEQESFEKKIRQLEEQNELIIKEREALQLQYRECQELLSLYQKYLSEQQEKLTLSLSELGAARAQEQQITKKKNTPQCSLMDLDGSFLSVARPQNYGQTKARPKSANQVSESFTELRNNSLRPITLHHPKEDLERMSTKTRTCTYESLGRRLINAAPIEKSLPVELKIKEYPNLPPTPSSQYCGHKCSESGAYVHENYHPTNMAPQCCKTHPESCSHCRIPWASQMHDRVILQPRETDIEKQLSEDRRQQLMLQKMELEIEKERLQHLLAQQETKLLLKQQQLHQSRLDYNWLRTQAMFKSRELVADKEFPKPDLDMNGSVSGP
IRESfinder result
IRESfinder score
0.612716066
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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