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mmu_circAtrx_3540
Basic information of circular RNA
PanCircBase ID:
mmu_circAtrx_3540
mm39_Chr. Position ID:
chrX|104918165|104934578|-
Gene name:
Atrx
Transcript:
ENSMUST00000113573.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
9,8,7,6,5,4,3
Exon/intron offsets:
0,3807,5349,9747,13155,14433,16357
Genomic length:
16413
Exon/intron sizes in nt:
3014,68,110,114,125,53,56
Flanking exon/introns:
chrX:104911529-104918165|chrX:104934578-104943486
Splice length:
3540
Other database IDs:
CIRCpedia: MMU_CIRCpedia_1625, circAtlas: mmu-Atrx_0049
Human Ortholog IDs:
Mature spliced Sequence:
ATAAAATCTGTGGTTCTGGACTTAATTCTGATATGATGGAAAATAACAAGGAAGAGGGAGCTAGCACCTCAGAAAAATCCAGATCTTCAGGTTCATCAAGGTCAAAGAGGAAACCTTCAATTGTGACAAAATATGTAGAATCTGATGATGAAAAACCCACGGATGAGAATGTAAATGAAAAAGCTGCTACTGAGAATTCAGAAAATGACATTACTATGCAAAGCTTGCCAAAAGGTACAGTGATTGTACAACCAGAGCCAGTGCTGAATGAAGACAAAGATGATTTTAAAGGGCCTGAATTTAGAAGCAGAAGTAAAATGAAAGCTGACAATCTCAAAAAACGCGGAGAAGATGGACTTCATGGGATCGTGAGCTGCACAGCTTGTGGACAGCAGGTCAATCATTTTCAAAAAGATTCCATTTATAGACACCCTTCACTCAAAGTCCTTATCTGTAAGAACTGCTTTAAGTATTATATGAGTGACGATATTAGCCGTGACTCAGATGGAATGGATGAACAATGTAGATGGTGTGCAGAAGGTGGGAACTTGATTTGTTGTGACTTTTGTCATAACGCCTTCTGTAAGAAATGCATCCTGCGCAACCTTGGTCGAAAGGAGTTGTCTACAATAATGGATGAAAACAATCAGTGGTATTGCTATATTTGTCAACCAGAGCCTCTACTGGACTTGGTGACTGCGTGCAACAGCGTATTTGAGAATTTAGAACAGTTGTTGCAACAGAATAAGAAGAAGATAAAAGTTGACAGTGAAAAGACTAGTAAAGTCTGTGACCAAACATCCAAATTTTCTCCAAAGAAGAGTAGTTCTAGTTGTAATGGAGAAGAAAAAAAGTTAGAGGAGTCCTGTTCTGGTTCTGTAAGCTCCACTTACTCTCACTCAGCACTATCTGTGCCCAAAGAGATGATTAAGAAGACAACAAAACTGATTGAGACTACATCCAACATGAACTCCAGTTACATTAAGTTTCTAAAACAGGCAGCAGATAATTCAGAAATGACTTCTGCTATGAAGTTATGTCAACTTAAGTCTTTTAAATCTGTGTTGGATGATATCAAGAAGGCTCATCTTGCATTAGAAGAAGATTTGAATTCAGAGATCCAAGCTTTGGATGATGTACACAAAGAAAAAAATACCAAAGACCTTAAAAGCACAGATGCTAAGTCTGAAACAAAATTAGGAAAAGGGGAAAAATCCTATTCTACAGAAAAGAGAGAGTTTTTAAAGTTAGATGCTAGATCATCAGTAAAGGCCATAGATGGTGAAGAGCAGAGAGCACACAAAAGTACTAGTGGGGAACATAAGGGTTCAGGTAGGAAAGATGGCTCTCAGTATGAACCCACTAACACTCCTGAGGATTTAGATATGGATATTGTGTCTGTTCCTTCCTCGGTTCCAGAAGACATTTTTGATAGCCTTGAGAGTGCTATGGAAGTTCAGAGTTCAGCTGATTATCAAGGAGACGGCAACAGTGGGACTGAGCCAGAACTGGAGAGCTCCTCTGTAAAATTAAATGTTTCTTCAAAAGACAGCAGAGGAAATATTAAGTCAAAAGTCACAGCGAAAGTAAGAAAAGAATTATTTGTTAAACTTACCCCAGTTTCCCTTTCTAATTCCCCAATTAAAGGTGTTGACTGTCAGGAAGTGTCACAAGAGAAGAATGGCCGTAAAAGTTCTGGGGTGGCCCGCAGCTCAGAGAAATGTAGACCCAGAGAGGAAATTAGTGATCATGAAAACAATGTCACAATACTTTTAGAAGACTCCGATCTTCGAAGATCCCCACGTGTAAAAACTACACCGTTGAGGCGACAGACAGAAAGCAACCCTGCAATGTCGAATTCAGATGAAGAAAGTAATGGAACTATGAAGGAGAAACAAAAGATGTCAGGTCCAATAAGAAAAAAGGATAAGAGAAACTCAGCTGACTGTGCTACTGATAACCCTAAACCTCACAAGGTACCCAAAGCTAAGCAACCAGTGATTGGGGATCAGAATTCAGATTCTGATGAAATGCTAGCAGTCCTCAAAGAGGCAAGTCAGATGGGGCATAGTTCTTCCTCAGACACTGACATTAATGAACCACAGATGAATCATAAAGGTAAAACAGGGAAAGATGATAATGGAAAAAGGAAACGGAAAAATTCTACTTCCGGGTCAGATTTTGACACTAAAAAAGGAAAATCAACAGAAACCTCTATTATCTCTAAAAAGAAACGCCAGAACTACTCAGAGTCCTCTAACTATGACTCAGAGTTAGAGAGAGAGATAAAAACCATGAGCAGAATTGGGGCTGCCAGAAAAAGTGTTCCAGAGAAAAAAGAAGAGGACTCTTCTGAAGATGAAAAACAGGGCAAAAAAGTAGTGGATAATGGAGGGCATGAGAGGGCGAAGACAACACAAGAAGGGTCATCTGCTGATGACACTGGTGACACTGAAGGCAGGCAGGGAGGGAGTTGCTCCATAGCAGGAGGTTCCATTGAGAAAGTCAGGAGTGGAGTGGAATTCCGAGAGATGCTTTGCAAACCTGGTGTTTCCTCTGATGGTGCTGAAAAGCCTTCAGTGAAAGAGGAGAACGTGAATTCCCCTGAAGACAAAAGAGTCTCTAAGACTAAAGAAAAGACTAAACATCTGAGAAGCAGACAAAGTAGAAAAGGAAAGGGTGGGTCATCTGATGGCACTGATCGATTTCCAAAGAAAGAGCAGAGCGATGAGTCTTCTGAAGGCGAAAAGAAGCAGAGCAGACAGAGACCTGGAACAAAAGGAAAGAAAGCCCCAGACTTAAAGGGAGAAACACTGAAGCGAGAGCAGGAGTGGGACTCTTCCTCTGATGGGACCGAGAGATTGCCGGAGGAAGAGGAGATTGGTCCTTTTTCTAAAGGCATAAAGCAAAGTAAAACTGACACAGCTGGTGGAGAAAAGAAAGGCAAAAAATGGAAAGATAAATCATGTGAAAAGAAGGAAGAATTATCTGATAGTGTTGATAAATTGCCAGGAAAAGGAGATAGTTGTGACTCTTCCGAAGATAAGAAGACCAGGAACAGAGTGTCTCTGAGAGAGAAGAAACGATTCAGCTTGCCTGCAAAGAGTCCAGGGAAGAGGCCAGAGTGTTCATCGTCAGATACTGAGAAATCCTTGAAAGGACAGTGTTGTGACTCCACTGAAAAGAGACCGAAAAGAATTGACTTGAGAGAAAGAAGAAACTCCAGTTCAAAGAGAAATACCAAGGAAGTAAAGAGTGCTTCATCCTCTTCTGATGCTGAGGGAAGCTCAGAAGATAATAAAAAGCAGAAGAAACAAAGAACTTCAGCCAAAAAGAAGACAGGCAATACGAAGGAGAAAAAAAGAAACTCCTTAAGAGCAACTCCTAAAAGGAAGCAAGTAGACATCACTTCTTCATCTTCTGATATAGGAGATGATGATCAGAATTCTGCAGGCGAGGAAAGCAGCGATGAACAGAAAATCAAACCCGTGACTGAAAATCTAGTGCTGCCTTCACACACTGGATTTTGTCAGTCTTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAGAATTCTGCAGGCGAGGA
60.11
TGAGGTGCTAGCTCCCTCTT
59.96
171
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAGAATTCTGCAGGCGAGGA
60.11
TTCTGAGGTGCTAGCTCCCT
59.96
174
PCR template sequence:
CAGAATTCTGCAGGCGAGGAAAGCAGCGATGAACAGAAAATCAAACCCGTGACTGAAAATCTAGTGCTGCCTTCACACACTGGATTTTGTCAGTCTTCAGATAAAATCTGTGGTTCTGGACTTAATTCTGATATGATGGAAAATAACAAGGAAGAGGGAGCTAGCACCTCAGAAAAATCCAGATCTTCAGGTTCATCAAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
17
Interacting miRNAs (#binding sites)
mmu-miR-335-3p(5), mmu-miR-200a-3p(2), mmu-miR-141-3p(2), mmu-miR-149-5p(2), mmu-miR-7b-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-328-3p(1), mmu-miR-24-3p(1), mmu-miR-300-3p(1), mmu-miR-673-5p(1), mmu-miR-5101(1), mmu-miR-369-3p(1), mmu-miR-532-5p(1), mmu-miR-1199-5p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGTCAGTCTTCAGATAAAATCTGTGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCATRX_3540_ORF_1
0.9984
0.109066613
1
7047
ORF sequence:
ATGATGGAAAATAACAAGGAAGAGGGAGCTAGCACCTCAGAAAAATCCAGATCTTCAGGTTCATCAAGGTCAAAGAGGAAACCTTCAATTGTGACAAAATATGTAGAATCTGATGATGAAAAACCCACGGATGAGAATGTAAATGAAAAAGCTGCTACTGAGAATTCAGAAAATGACATTACTATGCAAAGCTTGCCAAAAGGTACAGTGATTGTACAACCAGAGCCAGTGCTGAATGAAGACAAAGATGATTTTAAAGGGCCTGAATTTAGAAGCAGAAGTAAAATGAAAGCTGACAATCTCAAAAAACGCGGAGAAGATGGACTTCATGGGATCGTGAGCTGCACAGCTTGTGGACAGCAGGTCAATCATTTTCAAAAAGATTCCATTTATAGACACCCTTCACTCAAAGTCCTTATCTGTAAGAACTGCTTTAAGTATTATATGAGTGACGATATTAGCCGTGACTCAGATGGAATGGATGAACAATGTAGATGGTGTGCAGAAGGTGGGAACTTGATTTGTTGTGACTTTTGTCATAACGCCTTCTGTAAGAAATGCATCCTGCGCAACCTTGGTCGAAAGGAGTTGTCTACAATAATGGATGAAAACAATCAGTGGTATTGCTATATTTGTCAACCAGAGCCTCTACTGGACTTGGTGACTGCGTGCAACAGCGTATTTGAGAATTTAGAACAGTTGTTGCAACAGAATAAGAAGAAGATAAAAGTTGACAGTGAAAAGACTAGTAAAGTCTGTGACCAAACATCCAAATTTTCTCCAAAGAAGAGTAGTTCTAGTTGTAATGGAGAAGAAAAAAAGTTAGAGGAGTCCTGTTCTGGTTCTGTAAGCTCCACTTACTCTCACTCAGCACTATCTGTGCCCAAAGAGATGATTAAGAAGACAACAAAACTGATTGAGACTACATCCAACATGAACTCCAGTTACATTAAGTTTCTAAAACAGGCAGCAGATAATTCAGAAATGACTTCTGCTATGAAGTTATGTCAACTTAAGTCTTTTAAATCTGTGTTGGATGATATCAAGAAGGCTCATCTTGCATTAGAAGAAGATTTGAATTCAGAGATCCAAGCTTTGGATGATGTACACAAAGAAAAAAATACCAAAGACCTTAAAAGCACAGATGCTAAGTCTGAAACAAAATTAGGAAAAGGGGAAAAATCCTATTCTACAGAAAAGAGAGAGTTTTTAAAGTTAGATGCTAGATCATCAGTAAAGGCCATAGATGGTGAAGAGCAGAGAGCACACAAAAGTACTAGTGGGGAACATAAGGGTTCAGGTAGGAAAGATGGCTCTCAGTATGAACCCACTAACACTCCTGAGGATTTAGATATGGATATTGTGTCTGTTCCTTCCTCGGTTCCAGAAGACATTTTTGATAGCCTTGAGAGTGCTATGGAAGTTCAGAGTTCAGCTGATTATCAAGGAGACGGCAACAGTGGGACTGAGCCAGAACTGGAGAGCTCCTCTGTAAAATTAAATGTTTCTTCAAAAGACAGCAGAGGAAATATTAAGTCAAAAGTCACAGCGAAAGTAAGAAAAGAATTATTTGTTAAACTTACCCCAGTTTCCCTTTCTAATTCCCCAATTAAAGGTGTTGACTGTCAGGAAGTGTCACAAGAGAAGAATGGCCGTAAAAGTTCTGGGGTGGCCCGCAGCTCAGAGAAATGTAGACCCAGAGAGGAAATTAGTGATCATGAAAACAATGTCACAATACTTTTAGAAGACTCCGATCTTCGAAGATCCCCACGTGTAAAAACTACACCGTTGAGGCGACAGACAGAAAGCAACCCTGCAATGTCGAATTCAGATGAAGAAAGTAATGGAACTATGAAGGAGAAACAAAAGATGTCAGGTCCAATAAGAAAAAAGGATAAGAGAAACTCAGCTGACTGTGCTACTGATAACCCTAAACCTCACAAGGTACCCAAAGCTAAGCAACCAGTGATTGGGGATCAGAATTCAGATTCTGATGAAATGCTAGCAGTCCTCAAAGAGGCAAGTCAGATGGGGCATAGTTCTTCCTCAGACACTGACATTAATGAACCACAGATGAATCATAAAGGTAAAACAGGGAAAGATGATAATGGAAAAAGGAAACGGAAAAATTCTACTTCCGGGTCAGATTTTGACACTAAAAAAGGAAAATCAACAGAAACCTCTATTATCTCTAAAAAGAAACGCCAGAACTACTCAGAGTCCTCTAACTATGACTCAGAGTTAGAGAGAGAGATAAAAACCATGAGCAGAATTGGGGCTGCCAGAAAAAGTGTTCCAGAGAAAAAAGAAGAGGACTCTTCTGAAGATGAAAAACAGGGCAAAAAAGTAGTGGATAATGGAGGGCATGAGAGGGCGAAGACAACACAAGAAGGGTCATCTGCTGATGACACTGGTGACACTGAAGGCAGGCAGGGAGGGAGTTGCTCCATAGCAGGAGGTTCCATTGAGAAAGTCAGGAGTGGAGTGGAATTCCGAGAGATGCTTTGCAAACCTGGTGTTTCCTCTGATGGTGCTGAAAAGCCTTCAGTGAAAGAGGAGAACGTGAATTCCCCTGAAGACAAAAGAGTCTCTAAGACTAAAGAAAAGACTAAACATCTGAGAAGCAGACAAAGTAGAAAAGGAAAGGGTGGGTCATCTGATGGCACTGATCGATTTCCAAAGAAAGAGCAGAGCGATGAGTCTTCTGAAGGCGAAAAGAAGCAGAGCAGACAGAGACCTGGAACAAAAGGAAAGAAAGCCCCAGACTTAAAGGGAGAAACACTGAAGCGAGAGCAGGAGTGGGACTCTTCCTCTGATGGGACCGAGAGATTGCCGGAGGAAGAGGAGATTGGTCCTTTTTCTAAAGGCATAAAGCAAAGTAAAACTGACACAGCTGGTGGAGAAAAGAAAGGCAAAAAATGGAAAGATAAATCATGTGAAAAGAAGGAAGAATTATCTGATAGTGTTGATAAATTGCCAGGAAAAGGAGATAGTTGTGACTCTTCCGAAGATAAGAAGACCAGGAACAGAGTGTCTCTGAGAGAGAAGAAACGATTCAGCTTGCCTGCAAAGAGTCCAGGGAAGAGGCCAGAGTGTTCATCGTCAGATACTGAGAAATCCTTGAAAGGACAGTGTTGTGACTCCACTGAAAAGAGACCGAAAAGAATTGACTTGAGAGAAAGAAGAAACTCCAGTTCAAAGAGAAATACCAAGGAAGTAAAGAGTGCTTCATCCTCTTCTGATGCTGAGGGAAGCTCAGAAGATAATAAAAAGCAGAAGAAACAAAGAACTTCAGCCAAAAAGAAGACAGGCAATACGAAGGAGAAAAAAAGAAACTCCTTAAGAGCAACTCCTAAAAGGAAGCAAGTAGACATCACTTCTTCATCTTCTGATATAGGAGATGATGATCAGAATTCTGCAGGCGAGGAAAGCAGCGATGAACAGAAAATCAAACCCGTGACTGAAAATCTAGTGCTGCCTTCACACACTGGATTTTGTCAGTCTTCAGATAAAATCTGTGGTTCTGGACTTAATTCTGATATGATGGAAAATAACAAGGAAGAGGGAGCTAGCACCTCAGAAAAATCCAGATCTTCAGGTTCATCAAGGTCAAAGAGGAAACCTTCAATTGTGACAAAATATGTAGAATCTGATGATGAAAAACCCACGGATGAGAATGTAAATGAAAAAGCTGCTACTGAGAATTCAGAAAATGACATTACTATGCAAAGCTTGCCAAAAGGTACAGTGATTGTACAACCAGAGCCAGTGCTGAATGAAGACAAAGATGATTTTAAAGGGCCTGAATTTAGAAGCAGAAGTAAAATGAAAGCTGACAATCTCAAAAAACGCGGAGAAGATGGACTTCATGGGATCGTGAGCTGCACAGCTTGTGGACAGCAGGTCAATCATTTTCAAAAAGATTCCATTTATAGACACCCTTCACTCAAAGTCCTTATCTGTAAGAACTGCTTTAAGTATTATATGAGTGACGATATTAGCCGTGACTCAGATGGAATGGATGAACAATGTAGATGGTGTGCAGAAGGTGGGAACTTGATTTGTTGTGACTTTTGTCATAACGCCTTCTGTAAGAAATGCATCCTGCGCAACCTTGGTCGAAAGGAGTTGTCTACAATAATGGATGAAAACAATCAGTGGTATTGCTATATTTGTCAACCAGAGCCTCTACTGGACTTGGTGACTGCGTGCAACAGCGTATTTGAGAATTTAGAACAGTTGTTGCAACAGAATAAGAAGAAGATAAAAGTTGACAGTGAAAAGACTAGTAAAGTCTGTGACCAAACATCCAAATTTTCTCCAAAGAAGAGTAGTTCTAGTTGTAATGGAGAAGAAAAAAAGTTAGAGGAGTCCTGTTCTGGTTCTGTAAGCTCCACTTACTCTCACTCAGCACTATCTGTGCCCAAAGAGATGATTAAGAAGACAACAAAACTGATTGAGACTACATCCAACATGAACTCCAGTTACATTAAGTTTCTAAAACAGGCAGCAGATAATTCAGAAATGACTTCTGCTATGAAGTTATGTCAACTTAAGTCTTTTAAATCTGTGTTGGATGATATCAAGAAGGCTCATCTTGCATTAGAAGAAGATTTGAATTCAGAGATCCAAGCTTTGGATGATGTACACAAAGAAAAAAATACCAAAGACCTTAAAAGCACAGATGCTAAGTCTGAAACAAAATTAGGAAAAGGGGAAAAATCCTATTCTACAGAAAAGAGAGAGTTTTTAAAGTTAGATGCTAGATCATCAGTAAAGGCCATAGATGGTGAAGAGCAGAGAGCACACAAAAGTACTAGTGGGGAACATAAGGGTTCAGGTAGGAAAGATGGCTCTCAGTATGAACCCACTAACACTCCTGAGGATTTAGATATGGATATTGTGTCTGTTCCTTCCTCGGTTCCAGAAGACATTTTTGATAGCCTTGAGAGTGCTATGGAAGTTCAGAGTTCAGCTGATTATCAAGGAGACGGCAACAGTGGGACTGAGCCAGAACTGGAGAGCTCCTCTGTAAAATTAAATGTTTCTTCAAAAGACAGCAGAGGAAATATTAAGTCAAAAGTCACAGCGAAAGTAAGAAAAGAATTATTTGTTAAACTTACCCCAGTTTCCCTTTCTAATTCCCCAATTAAAGGTGTTGACTGTCAGGAAGTGTCACAAGAGAAGAATGGCCGTAAAAGTTCTGGGGTGGCCCGCAGCTCAGAGAAATGTAGACCCAGAGAGGAAATTAGTGATCATGAAAACAATGTCACAATACTTTTAGAAGACTCCGATCTTCGAAGATCCCCACGTGTAAAAACTACACCGTTGAGGCGACAGACAGAAAGCAACCCTGCAATGTCGAATTCAGATGAAGAAAGTAATGGAACTATGAAGGAGAAACAAAAGATGTCAGGTCCAATAAGAAAAAAGGATAAGAGAAACTCAGCTGACTGTGCTACTGATAACCCTAAACCTCACAAGGTACCCAAAGCTAAGCAACCAGTGATTGGGGATCAGAATTCAGATTCTGATGAAATGCTAGCAGTCCTCAAAGAGGCAAGTCAGATGGGGCATAGTTCTTCCTCAGACACTGACATTAATGAACCACAGATGAATCATAAAGGTAAAACAGGGAAAGATGATAATGGAAAAAGGAAACGGAAAAATTCTACTTCCGGGTCAGATTTTGACACTAAAAAAGGAAAATCAACAGAAACCTCTATTATCTCTAAAAAGAAACGCCAGAACTACTCAGAGTCCTCTAACTATGACTCAGAGTTAGAGAGAGAGATAAAAACCATGAGCAGAATTGGGGCTGCCAGAAAAAGTGTTCCAGAGAAAAAAGAAGAGGACTCTTCTGAAGATGAAAAACAGGGCAAAAAAGTAGTGGATAATGGAGGGCATGAGAGGGCGAAGACAACACAAGAAGGGTCATCTGCTGATGACACTGGTGACACTGAAGGCAGGCAGGGAGGGAGTTGCTCCATAGCAGGAGGTTCCATTGAGAAAGTCAGGAGTGGAGTGGAATTCCGAGAGATGCTTTGCAAACCTGGTGTTTCCTCTGATGGTGCTGAAAAGCCTTCAGTGAAAGAGGAGAACGTGAATTCCCCTGAAGACAAAAGAGTCTCTAAGACTAAAGAAAAGACTAAACATCTGAGAAGCAGACAAAGTAGAAAAGGAAAGGGTGGGTCATCTGATGGCACTGATCGATTTCCAAAGAAAGAGCAGAGCGATGAGTCTTCTGAAGGCGAAAAGAAGCAGAGCAGACAGAGACCTGGAACAAAAGGAAAGAAAGCCCCAGACTTAAAGGGAGAAACACTGAAGCGAGAGCAGGAGTGGGACTCTTCCTCTGATGGGACCGAGAGATTGCCGGAGGAAGAGGAGATTGGTCCTTTTTCTAAAGGCATAAAGCAAAGTAAAACTGACACAGCTGGTGGAGAAAAGAAAGGCAAAAAATGGAAAGATAAATCATGTGAAAAGAAGGAAGAATTATCTGATAGTGTTGATAAATTGCCAGGAAAAGGAGATAGTTGTGACTCTTCCGAAGATAAGAAGACCAGGAACAGAGTGTCTCTGAGAGAGAAGAAACGATTCAGCTTGCCTGCAAAGAGTCCAGGGAAGAGGCCAGAGTGTTCATCGTCAGATACTGAGAAATCCTTGAAAGGACAGTGTTGTGACTCCACTGAAAAGAGACCGAAAAGAATTGACTTGAGAGAAAGAAGAAACTCCAGTTCAAAGAGAAATACCAAGGAAGTAAAGAGTGCTTCATCCTCTTCTGATGCTGAGGGAAGCTCAGAAGATAATAAAAAGCAGAAGAAACAAAGAACTTCAGCCAAAAAGAAGACAGGCAATACGAAGGAGAAAAAAAGAAACTCCTTAAGAGCAACTCCTAAAAGGAAGCAAGTAGACATCACTTCTTCATCTTCTGATATAGGAGATGATGATCAGAATTCTGCAGGCGAGGAAAGCAGCGATGAACAGAAAATCAAACCCGTGACTGAAAATCTAGTGCTGCCTTCACACACTGGATTTTGTCAGTCTTCA
Peptide sequence:
MMENNKEEGASTSEKSRSSGSSRSKRKPSIVTKYVESDDEKPTDENVNEKAATENSENDITMQSLPKGTVIVQPEPVLNEDKDDFKGPEFRSRSKMKADNLKKRGEDGLHGIVSCTACGQQVNHFQKDSIYRHPSLKVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICQPEPLLDLVTACNSVFENLEQLLQQNKKKIKVDSEKTSKVCDQTSKFSPKKSSSSCNGEEKKLEESCSGSVSSTYSHSALSVPKEMIKKTTKLIETTSNMNSSYIKFLKQAADNSEMTSAMKLCQLKSFKSVLDDIKKAHLALEEDLNSEIQALDDVHKEKNTKDLKSTDAKSETKLGKGEKSYSTEKREFLKLDARSSVKAIDGEEQRAHKSTSGEHKGSGRKDGSQYEPTNTPEDLDMDIVSVPSSVPEDIFDSLESAMEVQSSADYQGDGNSGTEPELESSSVKLNVSSKDSRGNIKSKVTAKVRKELFVKLTPVSLSNSPIKGVDCQEVSQEKNGRKSSGVARSSEKCRPREEISDHENNVTILLEDSDLRRSPRVKTTPLRRQTESNPAMSNSDEESNGTMKEKQKMSGPIRKKDKRNSADCATDNPKPHKVPKAKQPVIGDQNSDSDEMLAVLKEASQMGHSSSSDTDINEPQMNHKGKTGKDDNGKRKRKNSTSGSDFDTKKGKSTETSIISKKKRQNYSESSNYDSELEREIKTMSRIGAARKSVPEKKEEDSSEDEKQGKKVVDNGGHERAKTTQEGSSADDTGDTEGRQGGSCSIAGGSIEKVRSGVEFREMLCKPGVSSDGAEKPSVKEENVNSPEDKRVSKTKEKTKHLRSRQSRKGKGGSSDGTDRFPKKEQSDESSEGEKKQSRQRPGTKGKKAPDLKGETLKREQEWDSSSDGTERLPEEEEIGPFSKGIKQSKTDTAGGEKKGKKWKDKSCEKKEELSDSVDKLPGKGDSCDSSEDKKTRNRVSLREKKRFSLPAKSPGKRPECSSSDTEKSLKGQCCDSTEKRPKRIDLRERRNSSSKRNTKEVKSASSSSDAEGSSEDNKKQKKQRTSAKKKTGNTKEKKRNSLRATPKRKQVDITSSSSDIGDDDQNSAGEESSDEQKIKPVTENLVLPSHTGFCQSSDKICGSGLNSDMMENNKEEGASTSEKSRSSGSSRSKRKPSIVTKYVESDDEKPTDENVNEKAATENSENDITMQSLPKGTVIVQPEPVLNEDKDDFKGPEFRSRSKMKADNLKKRGEDGLHGIVSCTACGQQVNHFQKDSIYRHPSLKVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICQPEPLLDLVTACNSVFENLEQLLQQNKKKIKVDSEKTSKVCDQTSKFSPKKSSSSCNGEEKKLEESCSGSVSSTYSHSALSVPKEMIKKTTKLIETTSNMNSSYIKFLKQAADNSEMTSAMKLCQLKSFKSVLDDIKKAHLALEEDLNSEIQALDDVHKEKNTKDLKSTDAKSETKLGKGEKSYSTEKREFLKLDARSSVKAIDGEEQRAHKSTSGEHKGSGRKDGSQYEPTNTPEDLDMDIVSVPSSVPEDIFDSLESAMEVQSSADYQGDGNSGTEPELESSSVKLNVSSKDSRGNIKSKVTAKVRKELFVKLTPVSLSNSPIKGVDCQEVSQEKNGRKSSGVARSSEKCRPREEISDHENNVTILLEDSDLRRSPRVKTTPLRRQTESNPAMSNSDEESNGTMKEKQKMSGPIRKKDKRNSADCATDNPKPHKVPKAKQPVIGDQNSDSDEMLAVLKEASQMGHSSSSDTDINEPQMNHKGKTGKDDNGKRKRKNSTSGSDFDTKKGKSTETSIISKKKRQNYSESSNYDSELEREIKTMSRIGAARKSVPEKKEEDSSEDEKQGKKVVDNGGHERAKTTQEGSSADDTGDTEGRQGGSCSIAGGSIEKVRSGVEFREMLCKPGVSSDGAEKPSVKEENVNSPEDKRVSKTKEKTKHLRSRQSRKGKGGSSDGTDRFPKKEQSDESSEGEKKQSRQRPGTKGKKAPDLKGETLKREQEWDSSSDGTERLPEEEEIGPFSKGIKQSKTDTAGGEKKGKKWKDKSCEKKEELSDSVDKLPGKGDSCDSSEDKKTRNRVSLREKKRFSLPAKSPGKRPECSSSDTEKSLKGQCCDSTEKRPKRIDLRERRNSSSKRNTKEVKSASSSSDAEGSSEDNKKQKKQRTSAKKKTGNTKEKKRNSLRATPKRKQVDITSSSSDIGDDDQNSAGEESSDEQKIKPVTENLVLPSHTGFCQSS
IRESfinder result
IRESfinder score
0.539591194
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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