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mmu_circAtp8b1_3422
Basic information of circular RNA
PanCircBase ID:
mmu_circAtp8b1_3422
mm39_Chr. Position ID:
chr18|64671621|64738471|-
Gene name:
Atp8b1
Transcript:
ENSMUST00000025482.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
25
Exon/intron indexes:
26,25,24,23,22,21,20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2
Exon/intron offsets:
0,480,1734,2727,6566,7440,11820,13289,14463,16563,18290,23029,23619,25792,29515,32466,32832,33108,34688,34936,38860,39037,40542,43350,66647
Genomic length:
66850
Exon/intron sizes in nt:
139,246,84,224,289,133,76,112,165,113,189,157,44,209,191,89,159,83,71,73,62,99,114,98,203
Flanking exon/introns:
chr18:64666795-64671621|chr18:64738471-64793770
Splice length:
3422
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGTTCCAATTTGCCAGCAGAATGAGCACAGAAAGAGACTCGGAAACAACATTTGATGAGGAGTCTCAGCCCAACGATGAAGTGGTCCCCTACAGTGATGATGAAACTGAAGACGAACTTGAAGATCAGGGGTCCACGGTTGAACCAGAACAGAATCGTGTCAACAGAGAAGCTGAGAAGAAGAGAGAGACATTCCGGAAAGATTGCACGTGGCAAGTCAAAGCAAATGACCGAAAGTTCCACGAACAACCTCATTTCATGAACACCAAGTTCTTTTGTATTAAGGAGAGCAAATATGCGAGTAATGCAATTAAAACATACAAGTACAATGGATTTACCTTTCTACCCATGAATTTGTTTGAGCAGTTTAAGAGGGCAGCCAACTTCTATTTCCTCATCCTCCTGATCCTGCAGGCAATTCCTCAAATCTCCACCCTGGCATGGTATACCACACTTGTACCTCTGCTTTTGGTGCTGGGCATCACGGCCATCAAAGACCTGGTAGATGATGTGGCTCGTCATAAAATGGACAAGGAAATCAACAATAGGACGTGTGAAGTCATTAAGGATGGCAGGTTCAAAATCATCAAGTGGAAAGATATCCAGGTTGGAGATGTCATCCGCCTGAAGAAGAATGATTTTATTCCAGCTGACATCCTGCTGTTGTCCAGTTCAGAGCCTAACAGCCTCTGCTATGTAGAAACGGCTGAGCTCGACGGAGAAACCAATTTGAAGTTCAAAATGGCCCTGGAAATCACGGACCAATATCTCCAAATAGAAGATAACTTGGCAACATTTGATGGTTTCATCGAATGTGAAGAACCAAACAATCGGTTAGACAAGTTCACAGGAACGCTGTTTTGGAAGAACCAAAGCTTTCCTTTGGATGCTGATAAAATCCTGTTACGAGGTTGTGTGATAAGGAACACCGATGTCTGCCATGGCCTGGTCATTTTTGCAGGTGCTGACACAAAGATAATGAAGAATAGTGGGAAAACCAGATTTAAAAGAACCAAAATTGATTACTTGATGAACTACATGGTGTACACGATCTTTATTGTTCTCATCCTGGTTTCTGCCGGCCTCGCCATTGGCCACGCCTATTGGGAAGCCCAAGTTGGCAATTATTCCTGGTACCTCTATGATGGAGAAAATGCCACACCGTCCTACCGGGGATTCCTGAATTTCTGGGGCTACATCATTGTATTGAACACCATGGTGCCCATTTCTCTCTATGTCAGTGTGGAAGTGATCCGTCTGGGACAGAGTCATTTCATCAACTGGGACCTGCAGATGTACTATGCTGAGAAGGACACTCCTGCCAAGGCGAGGACCACCACCTTGAATGAGCAGCTAGGGCAGATTCATTACATCTTCTCTGATAAGACGGGGACACTCACGCAAAATATCATGACCTTCAAAAAGTGCTGCATTAACGGGACTATCTATGGAGACCATCGAGATGCTTCTCAACACAGCCACAGCAAAATCGAGCTAGTGGACTTTAGCTGGAATACATTTGCCGATGGAAAGCTTGCATTTTATGACCATTACCTTATCGAGCAAATACAGTCAGGGAAAGAGCCAGAAGTACGACAGTTCTTCTTTTTGCTTTCGATTTGCCATACGGTCATGGTGGACAGAATTGATGGTCAGATCAACTACCAGGCGGCTTCTCCTGATGAAGGCGCCCTGGTAAACGCCGCCAGGAACTTCGGCTTTGCCTTTCTCGCCCGGACGCAGAACACCATCACCGTCAGCGAACTGGGCTCAGAGAGGACCTACAACGTCCTTGCCATTTTGGATTTCAACAGCGACCGAAAGCGGATGTCTATCATCGTGAGGACCCCAGAAGGTAGTATCCGGCTGTACTGTAAAGGTGCTGACACCGTGATTTATGAACGGCTCCATCGGATGAATCCTACGAAGCAAGAAACACAGGATGCCCTGGATATCTTTGCAAGTGAGACTCTCAGGACCCTGTGCCTGTGCTACAAGGAAATTGAAGAAAAAGAATTTACAGAATGGAATAATAAGTTTATGGCCGCCAGCGTGGCCTCAAGCAACCGAGACGAAGCGTTGGATAAAGTGTACGAGGAGATTGAGAAAGACTTGATTCTCTTGGGAGCTACTGCTATTGAAGACAAGCTACAGGATGGAGTCCCAGAAACCATTTCAAAACTTGCAAAAGCTGACATTAAGATCTGGGTACTCACCGGAGACAAAAAGGAAACTGCAGAAAACATAGGTTTTGCCTGTGAACTCTTGACGGAAGACACTACTATCTGCTACGGAGAGGACATAAACTCTCTTCTTCACACCAGGATGGAGAATCAGAGAAACAGAGGTGGAGTCTCTGCGAAATTTGCACCTCCTGTGTATGAACCCTTTTTTCCACCTGGAGAAAACCGTGCCTTAATCATCACTGGCTCCTGGCTGAATGAAATCCTTCTAGAGAAGAAGACCAAGAGAAGTAAGATCCTGAAGCTGAAGTTCCCAAGGACAGAGGAGGAGAGGCGGATGCGGAGCCAGAGCCGGAGACGGCTGGAAGAGAAGAAAGAGCAGCGGCAAAAGAACTTCGTGGACCTGGCCTGCGAGTGCAGCGCCGTCATCTGCTGCCGCGTCACGCCCAAGCAGAAGGCCATGGTGGTGGACCTGGTGAAGAGGTACAAGAAAGCCATCACCCTGGCCATCGGAGACGGGGCCAATGATGTCAACATGATCAAAACTGCCCACATTGGTGTTGGAATAAGTGGACAAGAAGGGATGCAAGCTGTCATGTCCAGTGACTATTCTTTTGCTCAGTTCAGATATCTGCAGCGGTTGCTGCTGGTCCACGGCCGGTGGTCTTACATAAGGATGTGCAAGTTCCTACGATACTTCTTTTACAAGAACTTTGCCTTTACTTTAGTTCATTTCTGGTACTCCTTCTTCAATGGCTACTCAGCCCAGACGGCGTATGAGGATTGGTTTATCACCCTCTACAACGTGCTGTACTCCAGTTTGCCTGTGCTCCTCATGGGGCTGCTGGATCAGGACGTGAGTGACAAGCTGAGCCTCCGATTCCCTGGGCTGTATGTAGTGGGGCAGAGGGACTTGCTGTTCAACTATAAGAGATTCTTTGTCAGTTTGCTGCATGGGGTCTTAACCTCAATGGTCCTCTTCTTCATACCGCTTGGTGCTTATCTGCAAACAGTGGGACAGGATGGGGAGGCGCCTTCAGACTACCAGTCCTTCGCCGTCACGGTGGCCTCCGCTCTAGTGATAACGGTCAACTTCCAGATTGGCTTGGATACTTCATACTGGACTTTTGTGAATGCCTTTTCAATTTTCGGCAGCATCGCACTGTACTTCGGCATCATGTTTGATTTCCACAGTGCTGGGATACACGTTCTCTTTCCGTCCGCATTTCAGTTCACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATCGCACTGTACTTCGGCAT
59.82
CCACTTCATCGTTGGGCTGA
60.32
168
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATCGCACTGTACTTCGGCAT
59.82
GACCACTTCATCGTTGGGCT
60.32
170
PCR template sequence:
TTTTCAATTTTCGGCAGCATCGCACTGTACTTCGGCATCATGTTTGATTTCCACAGTGCTGGGATACACGTTCTCTTTCCGTCCGCATTTCAGTTCACAGGTAGTTCCAATTTGCCAGCAGAATGAGCACAGAAAGAGACTCGGAAACAACATTTGATGAGGAGTCTCAGCCCAACGATGAAGTGGTCCCCTACAGTGAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
24
Interacting miRNAs (#binding sites)
mmu-miR-135a-5p(2), mmu-miR-149-5p(2), mmu-miR-9-5p(1), mmu-miR-375-3p(1), mmu-miR-221-3p(1), mmu-miR-19b-3p(1), mmu-miR-101a-3p(1), mmu-miR-26a-5p(1), mmu-miR-322-5p(1), mmu-miR-19a-3p(1), mmu-miR-101b-3p(1), mmu-miR-222-3p(1), mmu-miR-203-3p(1), mmu-miR-324-5p(1), mmu-miR-125b-5p(1), mmu-miR-26b-5p(1), mmu-miR-297a-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-5101(1), mmu-miR-539-5p(1), mmu-miR-452-3p(1), mmu-miR-466b-3p(1), mmu-miR-670-5p(1), mmu-miR-490-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTCAGTTCACAGGTAGTTCCAATTT
siRNA sets
AAATTGGAACTACCTGTGA, ATTGGAACTACCTGTGAAC, AATTGGAACTACCTGTGAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCATP8B1_3422_ORF_1
1.1497
0.318803283
1
3426
ORF sequence:
ATGAGCACAGAAAGAGACTCGGAAACAACATTTGATGAGGAGTCTCAGCCCAACGATGAAGTGGTCCCCTACAGTGATGATGAAACTGAAGACGAACTTGAAGATCAGGGGTCCACGGTTGAACCAGAACAGAATCGTGTCAACAGAGAAGCTGAGAAGAAGAGAGAGACATTCCGGAAAGATTGCACGTGGCAAGTCAAAGCAAATGACCGAAAGTTCCACGAACAACCTCATTTCATGAACACCAAGTTCTTTTGTATTAAGGAGAGCAAATATGCGAGTAATGCAATTAAAACATACAAGTACAATGGATTTACCTTTCTACCCATGAATTTGTTTGAGCAGTTTAAGAGGGCAGCCAACTTCTATTTCCTCATCCTCCTGATCCTGCAGGCAATTCCTCAAATCTCCACCCTGGCATGGTATACCACACTTGTACCTCTGCTTTTGGTGCTGGGCATCACGGCCATCAAAGACCTGGTAGATGATGTGGCTCGTCATAAAATGGACAAGGAAATCAACAATAGGACGTGTGAAGTCATTAAGGATGGCAGGTTCAAAATCATCAAGTGGAAAGATATCCAGGTTGGAGATGTCATCCGCCTGAAGAAGAATGATTTTATTCCAGCTGACATCCTGCTGTTGTCCAGTTCAGAGCCTAACAGCCTCTGCTATGTAGAAACGGCTGAGCTCGACGGAGAAACCAATTTGAAGTTCAAAATGGCCCTGGAAATCACGGACCAATATCTCCAAATAGAAGATAACTTGGCAACATTTGATGGTTTCATCGAATGTGAAGAACCAAACAATCGGTTAGACAAGTTCACAGGAACGCTGTTTTGGAAGAACCAAAGCTTTCCTTTGGATGCTGATAAAATCCTGTTACGAGGTTGTGTGATAAGGAACACCGATGTCTGCCATGGCCTGGTCATTTTTGCAGGTGCTGACACAAAGATAATGAAGAATAGTGGGAAAACCAGATTTAAAAGAACCAAAATTGATTACTTGATGAACTACATGGTGTACACGATCTTTATTGTTCTCATCCTGGTTTCTGCCGGCCTCGCCATTGGCCACGCCTATTGGGAAGCCCAAGTTGGCAATTATTCCTGGTACCTCTATGATGGAGAAAATGCCACACCGTCCTACCGGGGATTCCTGAATTTCTGGGGCTACATCATTGTATTGAACACCATGGTGCCCATTTCTCTCTATGTCAGTGTGGAAGTGATCCGTCTGGGACAGAGTCATTTCATCAACTGGGACCTGCAGATGTACTATGCTGAGAAGGACACTCCTGCCAAGGCGAGGACCACCACCTTGAATGAGCAGCTAGGGCAGATTCATTACATCTTCTCTGATAAGACGGGGACACTCACGCAAAATATCATGACCTTCAAAAAGTGCTGCATTAACGGGACTATCTATGGAGACCATCGAGATGCTTCTCAACACAGCCACAGCAAAATCGAGCTAGTGGACTTTAGCTGGAATACATTTGCCGATGGAAAGCTTGCATTTTATGACCATTACCTTATCGAGCAAATACAGTCAGGGAAAGAGCCAGAAGTACGACAGTTCTTCTTTTTGCTTTCGATTTGCCATACGGTCATGGTGGACAGAATTGATGGTCAGATCAACTACCAGGCGGCTTCTCCTGATGAAGGCGCCCTGGTAAACGCCGCCAGGAACTTCGGCTTTGCCTTTCTCGCCCGGACGCAGAACACCATCACCGTCAGCGAACTGGGCTCAGAGAGGACCTACAACGTCCTTGCCATTTTGGATTTCAACAGCGACCGAAAGCGGATGTCTATCATCGTGAGGACCCCAGAAGGTAGTATCCGGCTGTACTGTAAAGGTGCTGACACCGTGATTTATGAACGGCTCCATCGGATGAATCCTACGAAGCAAGAAACACAGGATGCCCTGGATATCTTTGCAAGTGAGACTCTCAGGACCCTGTGCCTGTGCTACAAGGAAATTGAAGAAAAAGAATTTACAGAATGGAATAATAAGTTTATGGCCGCCAGCGTGGCCTCAAGCAACCGAGACGAAGCGTTGGATAAAGTGTACGAGGAGATTGAGAAAGACTTGATTCTCTTGGGAGCTACTGCTATTGAAGACAAGCTACAGGATGGAGTCCCAGAAACCATTTCAAAACTTGCAAAAGCTGACATTAAGATCTGGGTACTCACCGGAGACAAAAAGGAAACTGCAGAAAACATAGGTTTTGCCTGTGAACTCTTGACGGAAGACACTACTATCTGCTACGGAGAGGACATAAACTCTCTTCTTCACACCAGGATGGAGAATCAGAGAAACAGAGGTGGAGTCTCTGCGAAATTTGCACCTCCTGTGTATGAACCCTTTTTTCCACCTGGAGAAAACCGTGCCTTAATCATCACTGGCTCCTGGCTGAATGAAATCCTTCTAGAGAAGAAGACCAAGAGAAGTAAGATCCTGAAGCTGAAGTTCCCAAGGACAGAGGAGGAGAGGCGGATGCGGAGCCAGAGCCGGAGACGGCTGGAAGAGAAGAAAGAGCAGCGGCAAAAGAACTTCGTGGACCTGGCCTGCGAGTGCAGCGCCGTCATCTGCTGCCGCGTCACGCCCAAGCAGAAGGCCATGGTGGTGGACCTGGTGAAGAGGTACAAGAAAGCCATCACCCTGGCCATCGGAGACGGGGCCAATGATGTCAACATGATCAAAACTGCCCACATTGGTGTTGGAATAAGTGGACAAGAAGGGATGCAAGCTGTCATGTCCAGTGACTATTCTTTTGCTCAGTTCAGATATCTGCAGCGGTTGCTGCTGGTCCACGGCCGGTGGTCTTACATAAGGATGTGCAAGTTCCTACGATACTTCTTTTACAAGAACTTTGCCTTTACTTTAGTTCATTTCTGGTACTCCTTCTTCAATGGCTACTCAGCCCAGACGGCGTATGAGGATTGGTTTATCACCCTCTACAACGTGCTGTACTCCAGTTTGCCTGTGCTCCTCATGGGGCTGCTGGATCAGGACGTGAGTGACAAGCTGAGCCTCCGATTCCCTGGGCTGTATGTAGTGGGGCAGAGGGACTTGCTGTTCAACTATAAGAGATTCTTTGTCAGTTTGCTGCATGGGGTCTTAACCTCAATGGTCCTCTTCTTCATACCGCTTGGTGCTTATCTGCAAACAGTGGGACAGGATGGGGAGGCGCCTTCAGACTACCAGTCCTTCGCCGTCACGGTGGCCTCCGCTCTAGTGATAACGGTCAACTTCCAGATTGGCTTGGATACTTCATACTGGACTTTTGTGAATGCCTTTTCAATTTTCGGCAGCATCGCACTGTACTTCGGCATCATGTTTGATTTCCACAGTGCTGGGATACACGTTCTCTTTCCGTCCGCATTTCAGTTCACAGGTAGTTCCAATTTGCCAGCAGAATGA
Peptide sequence:
MSTERDSETTFDEESQPNDEVVPYSDDETEDELEDQGSTVEPEQNRVNREAEKKRETFRKDCTWQVKANDRKFHEQPHFMNTKFFCIKESKYASNAIKTYKYNGFTFLPMNLFEQFKRAANFYFLILLILQAIPQISTLAWYTTLVPLLLVLGITAIKDLVDDVARHKMDKEINNRTCEVIKDGRFKIIKWKDIQVGDVIRLKKNDFIPADILLLSSSEPNSLCYVETAELDGETNLKFKMALEITDQYLQIEDNLATFDGFIECEEPNNRLDKFTGTLFWKNQSFPLDADKILLRGCVIRNTDVCHGLVIFAGADTKIMKNSGKTRFKRTKIDYLMNYMVYTIFIVLILVSAGLAIGHAYWEAQVGNYSWYLYDGENATPSYRGFLNFWGYIIVLNTMVPISLYVSVEVIRLGQSHFINWDLQMYYAEKDTPAKARTTTLNEQLGQIHYIFSDKTGTLTQNIMTFKKCCINGTIYGDHRDASQHSHSKIELVDFSWNTFADGKLAFYDHYLIEQIQSGKEPEVRQFFFLLSICHTVMVDRIDGQINYQAASPDEGALVNAARNFGFAFLARTQNTITVSELGSERTYNVLAILDFNSDRKRMSIIVRTPEGSIRLYCKGADTVIYERLHRMNPTKQETQDALDIFASETLRTLCLCYKEIEEKEFTEWNNKFMAASVASSNRDEALDKVYEEIEKDLILLGATAIEDKLQDGVPETISKLAKADIKIWVLTGDKKETAENIGFACELLTEDTTICYGEDINSLLHTRMENQRNRGGVSAKFAPPVYEPFFPPGENRALIITGSWLNEILLEKKTKRSKILKLKFPRTEEERRMRSQSRRRLEEKKEQRQKNFVDLACECSAVICCRVTPKQKAMVVDLVKRYKKAITLAIGDGANDVNMIKTAHIGVGISGQEGMQAVMSSDYSFAQFRYLQRLLLVHGRWSYIRMCKFLRYFFYKNFAFTLVHFWYSFFNGYSAQTAYEDWFITLYNVLYSSLPVLLMGLLDQDVSDKLSLRFPGLYVVGQRDLLFNYKRFFVSLLHGVLTSMVLFFIPLGAYLQTVGQDGEAPSDYQSFAVTVASALVITVNFQIGLDTSYWTFVNAFSIFGSIALYFGIMFDFHSAGIHVLFPSAFQFTGSSNLPAE
IRESfinder result
IRESfinder score
0.489438704
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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