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mmu_circAtp8a2_2163
Basic information of circular RNA
PanCircBase ID:
mmu_circAtp8a2_2163
mm39_Chr. Position ID:
chr14|60162455|60284209|-
Gene name:
Atp8a2
Transcript:
ENSMUST00000080368.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
23
Exon/intron indexes:
24,23,22,21,20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2
Exon/intron offsets:
0,72994,81222,83348,84796,87372,90867,91782,92553,95752,98116,98442,101134,101918,102942,108703,110178,111961,113967,119310,119961,120997,121654
Genomic length:
121754
Exon/intron sizes in nt:
17,36,51,39,14,08,57,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr14:60097762-60162455|chr14:60284209-60324030
Splice length:
2163
Other database IDs:
CIRCpedia: MMU_CIRCpedia_24724, circAtlas: mmu-Atp8a2_0014
circAtlas: hsa-ATP8A2_0015
Human Ortholog IDs:
Mature spliced Sequence:
TACGGCCAAGTACAGCGTGTTGACATTTCTACCTCGATTCCTGTATGAGCAGATTAGGAGAGCTGCTAACGCCTTCTTCCTCTTCATTGCCTTATTACAGCAAATCCCAGACGTCTCACCAACAGGACGGTACACCACCCTGGTGCCCTTGGTCATCATTCTAACGATTGCAGGCATCAAAGAGATCATAGAAGATTTTAAACGACATAAGGCAGACAATGCAGTTAACAAGAAGAAAACAATAGTGTTAAGAAATGGCATGTGGCACACTATCATGTGGAAAGAGGTGGCAGTGGGAGACATCGTGAAGGTCCTCAATGGGCAGTATCTTCCAGCAGACATGGTCCTGTTCTCCTCCAGTGAGCCCCAGGGGATGTGCTATGTTGAAACTGCTAACCTGGATGGCGAGACGAACCTTAAAATACGACAGGGCTTGAGCCACACAACCGACATGCAGACGAGGGACGTGCTCATGAAGCTGTCGGGAAGGATAGAGTGTGAAGGGCCCAACCGCCACCTCTACGACTTCACCGGCAACCTGCACTTGGATGGGAAGAGCTCCGTTGCCCTTGGACCTGACCAGATCCTTCTGAGAGGCACCCAGCTCAGGAACACACAGTGGGTCTTCGGCGTCGTTGTGTACACTGGACATGACAGCAAGCTCATGCAGAATTCAACAAAAGCACCTCTCAAGAGATCAAATGTTGAGAAGGTAACCAACGTGCAGATCCTGGTGCTGTTTGGTATCCTCCTGGTCATGGCGCTGGTGAGCTCTGTGGGGGCCCTGTTCTGGAATGGGTCTCATGGCGGAAAGAGTTGGTACATCAAGAAGATGGACACGAACTCAGATAATTTTGGCTACAACTTGCTAACGTTTATCATCTTGTACAACAATCTGATTCCTATCAGCCTGCTGGTGACACTTGAGGTTGTGAAATACACGCAAGCCCTCTTCATAAACTGGGACATGGATATGTATTATATTGAAAATGACACTCCTGCAATGGCCAGGACATCAAACCTCAACGAAGAGCTGGGGCAGGTAAAATACCTGTTTTCAGACAAGACTGGAACTCTTACATGTAATATCATGAACTTCAAGAAGTGTAGCATTGCTGGTGTGACCTATGGCCACTTCCCGGAACTAGCCAGAGAGCAGTCCTCAGATGACTTCTGCCGGATGACTTCTTGTACCAATGACTCATGTGACTTCAATGATCCCAGGCTGTTAAAGAACATCGAGGATCAGCACCCTACAGCCCCTTGCATACAAGAGTTCCTTACCCTGCTGGCTGTGTGTCACACCGTCGTCCCCGAGAAGGATGGAGATGAAATTATCTACCAAGCCTCGTCCCCAGATGAAGCTGCTTTGGTCAAAGGAGCTAAGAAGCTTGGCTTTGTGTTTACCGGGAGGACGCCGTACTCGGTCATCATCGAAGCGATGGGACAAGAACAGACATTCGGGATCCTCAATGTTCTAGAATTTTCTAGTGACAGGAAAAGAATGTCTGTCATTGTCCGACTGCCATCAGGACAACTTCGACTCTACTGCAAGGGAGCCGATAACGTCATCTTTGAAAGACTCTCAAAGGACTCAAAGTACATGGAGGAGACGCTATGCCATCTGGAATATTTTGCCACAGAAGGCCTGCGGACTCTGTGCGTGGCCTACGCAGACCTTTCTGAGAATGAGTATGAGGAGTGGCTGAAAGTCTATCAAGAGGCCAGCATCATTCTGAAGGACAGAGCCCAGAGGCTGGAAGAGTGTTACGAGATCATTGAGAAGAATTTACTGTTACTTGGAGCTACAGCCATCGAAGACCGTCTTCAAGCCGGCGTTCCAGAAACCATAGCCACTCTGCTGAAGGCAGAAATCAAAATCTGGGTGTTGACAGGAGACAAACAAGAAACTGCAATTAATATCGGGTATTCCTGTCGGTTGGTGTCGCAGAACATGGCCCTTATCCTATTGAAGGAGGACTCTTTAGATGCAACAAGGGCGGCCATCACTCAGCACTGCACAGATCTTGGAAATTTGCTGGGCAAAGAGAACGATGTGGCCCTCATCATCGATGGCCATACCCTGAAGTATGCACTCTCCTTTGAAGTCCGCAGAAGTTTCCTGGACCTGGCGCTCTCATGCAAAGCTGTCATCTGCTGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCCGCAGAAGTTTCCTGGAC
59.97
GCAATGAAGAGGAAGAAGGCG
59.6
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTCCGCAGAAGTTTCCTGGA
59.97
GCAATGAAGAGGAAGAAGGCG
59.6
146
PCR template sequence:
TCATCATCGATGGCCATACCCTGAAGTATGCACTCTCCTTTGAAGTCCGCAGAAGTTTCCTGGACCTGGCGCTCTCATGCAAAGCTGTCATCTGCTGCAGTACGGCCAAGTACAGCGTGTTGACATTTCTACCTCGATTCCTGTATGAGCAGATTAGGAGAGCTGCTAACGCCTTCTTCCTCTTCATTGCCTTATTACAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
19
Interacting miRNAs (#binding sites)
mmu-miR-199a-5p(1), mmu-let-7e-5p(1), mmu-miR-29a-3p(1), mmu-miR-33-5p(1), mmu-miR-324-5p(1), mmu-miR-326-3p(1), mmu-miR-214-3p(1), mmu-miR-676-3p(1), mmu-miR-194-5p(1), mmu-miR-382-5p(1), mmu-miR-224-5p(1), mmu-miR-98-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-1198-5p(1), mmu-miR-300-3p(1), mmu-miR-5101(1), mmu-miR-369-3p(1), mmu-miR-376a-3p(1), mmu-miR-542-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TCATCTGCTGCAGTACGGCCAAGTAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCATP8A2_2163_ORF_1
1.2722
0.329522727
1
4065
ORF sequence:
ATGTGGCACACTATCATGTGGAAAGAGGTGGCAGTGGGAGACATCGTGAAGGTCCTCAATGGGCAGTATCTTCCAGCAGACATGGTCCTGTTCTCCTCCAGTGAGCCCCAGGGGATGTGCTATGTTGAAACTGCTAACCTGGATGGCGAGACGAACCTTAAAATACGACAGGGCTTGAGCCACACAACCGACATGCAGACGAGGGACGTGCTCATGAAGCTGTCGGGAAGGATAGAGTGTGAAGGGCCCAACCGCCACCTCTACGACTTCACCGGCAACCTGCACTTGGATGGGAAGAGCTCCGTTGCCCTTGGACCTGACCAGATCCTTCTGAGAGGCACCCAGCTCAGGAACACACAGTGGGTCTTCGGCGTCGTTGTGTACACTGGACATGACAGCAAGCTCATGCAGAATTCAACAAAAGCACCTCTCAAGAGATCAAATGTTGAGAAGGTAACCAACGTGCAGATCCTGGTGCTGTTTGGTATCCTCCTGGTCATGGCGCTGGTGAGCTCTGTGGGGGCCCTGTTCTGGAATGGGTCTCATGGCGGAAAGAGTTGGTACATCAAGAAGATGGACACGAACTCAGATAATTTTGGCTACAACTTGCTAACGTTTATCATCTTGTACAACAATCTGATTCCTATCAGCCTGCTGGTGACACTTGAGGTTGTGAAATACACGCAAGCCCTCTTCATAAACTGGGACATGGATATGTATTATATTGAAAATGACACTCCTGCAATGGCCAGGACATCAAACCTCAACGAAGAGCTGGGGCAGGTAAAATACCTGTTTTCAGACAAGACTGGAACTCTTACATGTAATATCATGAACTTCAAGAAGTGTAGCATTGCTGGTGTGACCTATGGCCACTTCCCGGAACTAGCCAGAGAGCAGTCCTCAGATGACTTCTGCCGGATGACTTCTTGTACCAATGACTCATGTGACTTCAATGATCCCAGGCTGTTAAAGAACATCGAGGATCAGCACCCTACAGCCCCTTGCATACAAGAGTTCCTTACCCTGCTGGCTGTGTGTCACACCGTCGTCCCCGAGAAGGATGGAGATGAAATTATCTACCAAGCCTCGTCCCCAGATGAAGCTGCTTTGGTCAAAGGAGCTAAGAAGCTTGGCTTTGTGTTTACCGGGAGGACGCCGTACTCGGTCATCATCGAAGCGATGGGACAAGAACAGACATTCGGGATCCTCAATGTTCTAGAATTTTCTAGTGACAGGAAAAGAATGTCTGTCATTGTCCGACTGCCATCAGGACAACTTCGACTCTACTGCAAGGGAGCCGATAACGTCATCTTTGAAAGACTCTCAAAGGACTCAAAGTACATGGAGGAGACGCTATGCCATCTGGAATATTTTGCCACAGAAGGCCTGCGGACTCTGTGCGTGGCCTACGCAGACCTTTCTGAGAATGAGTATGAGGAGTGGCTGAAAGTCTATCAAGAGGCCAGCATCATTCTGAAGGACAGAGCCCAGAGGCTGGAAGAGTGTTACGAGATCATTGAGAAGAATTTACTGTTACTTGGAGCTACAGCCATCGAAGACCGTCTTCAAGCCGGCGTTCCAGAAACCATAGCCACTCTGCTGAAGGCAGAAATCAAAATCTGGGTGTTGACAGGAGACAAACAAGAAACTGCAATTAATATCGGGTATTCCTGTCGGTTGGTGTCGCAGAACATGGCCCTTATCCTATTGAAGGAGGACTCTTTAGATGCAACAAGGGCGGCCATCACTCAGCACTGCACAGATCTTGGAAATTTGCTGGGCAAAGAGAACGATGTGGCCCTCATCATCGATGGCCATACCCTGAAGTATGCACTCTCCTTTGAAGTCCGCAGAAGTTTCCTGGACCTGGCGCTCTCATGCAAAGCTGTCATCTGCTGCAGTACGGCCAAGTACAGCGTGTTGACATTTCTACCTCGATTCCTGTATGAGCAGATTAGGAGAGCTGCTAACGCCTTCTTCCTCTTCATTGCCTTATTACAGCAAATCCCAGACGTCTCACCAACAGGACGGTACACCACCCTGGTGCCCTTGGTCATCATTCTAACGATTGCAGGCATCAAAGAGATCATAGAAGATTTTAAACGACATAAGGCAGACAATGCAGTTAACAAGAAGAAAACAATAGTGTTAAGAAATGGCATGTGGCACACTATCATGTGGAAAGAGGTGGCAGTGGGAGACATCGTGAAGGTCCTCAATGGGCAGTATCTTCCAGCAGACATGGTCCTGTTCTCCTCCAGTGAGCCCCAGGGGATGTGCTATGTTGAAACTGCTAACCTGGATGGCGAGACGAACCTTAAAATACGACAGGGCTTGAGCCACACAACCGACATGCAGACGAGGGACGTGCTCATGAAGCTGTCGGGAAGGATAGAGTGTGAAGGGCCCAACCGCCACCTCTACGACTTCACCGGCAACCTGCACTTGGATGGGAAGAGCTCCGTTGCCCTTGGACCTGACCAGATCCTTCTGAGAGGCACCCAGCTCAGGAACACACAGTGGGTCTTCGGCGTCGTTGTGTACACTGGACATGACAGCAAGCTCATGCAGAATTCAACAAAAGCACCTCTCAAGAGATCAAATGTTGAGAAGGTAACCAACGTGCAGATCCTGGTGCTGTTTGGTATCCTCCTGGTCATGGCGCTGGTGAGCTCTGTGGGGGCCCTGTTCTGGAATGGGTCTCATGGCGGAAAGAGTTGGTACATCAAGAAGATGGACACGAACTCAGATAATTTTGGCTACAACTTGCTAACGTTTATCATCTTGTACAACAATCTGATTCCTATCAGCCTGCTGGTGACACTTGAGGTTGTGAAATACACGCAAGCCCTCTTCATAAACTGGGACATGGATATGTATTATATTGAAAATGACACTCCTGCAATGGCCAGGACATCAAACCTCAACGAAGAGCTGGGGCAGGTAAAATACCTGTTTTCAGACAAGACTGGAACTCTTACATGTAATATCATGAACTTCAAGAAGTGTAGCATTGCTGGTGTGACCTATGGCCACTTCCCGGAACTAGCCAGAGAGCAGTCCTCAGATGACTTCTGCCGGATGACTTCTTGTACCAATGACTCATGTGACTTCAATGATCCCAGGCTGTTAAAGAACATCGAGGATCAGCACCCTACAGCCCCTTGCATACAAGAGTTCCTTACCCTGCTGGCTGTGTGTCACACCGTCGTCCCCGAGAAGGATGGAGATGAAATTATCTACCAAGCCTCGTCCCCAGATGAAGCTGCTTTGGTCAAAGGAGCTAAGAAGCTTGGCTTTGTGTTTACCGGGAGGACGCCGTACTCGGTCATCATCGAAGCGATGGGACAAGAACAGACATTCGGGATCCTCAATGTTCTAGAATTTTCTAGTGACAGGAAAAGAATGTCTGTCATTGTCCGACTGCCATCAGGACAACTTCGACTCTACTGCAAGGGAGCCGATAACGTCATCTTTGAAAGACTCTCAAAGGACTCAAAGTACATGGAGGAGACGCTATGCCATCTGGAATATTTTGCCACAGAAGGCCTGCGGACTCTGTGCGTGGCCTACGCAGACCTTTCTGAGAATGAGTATGAGGAGTGGCTGAAAGTCTATCAAGAGGCCAGCATCATTCTGAAGGACAGAGCCCAGAGGCTGGAAGAGTGTTACGAGATCATTGAGAAGAATTTACTGTTACTTGGAGCTACAGCCATCGAAGACCGTCTTCAAGCCGGCGTTCCAGAAACCATAGCCACTCTGCTGAAGGCAGAAATCAAAATCTGGGTGTTGACAGGAGACAAACAAGAAACTGCAATTAATATCGGGTATTCCTGTCGGTTGGTGTCGCAGAACATGGCCCTTATCCTATTGAAGGAGGACTCTTTAGATGCAACAAGGGCGGCCATCACTCAGCACTGCACAGATCTTGGAAATTTGCTGGGCAAAGAGAACGATGTGGCCCTCATCATCGATGGCCATACCCTGAAGTATGCACTCTCCTTTGAAGTCCGCAGAAGTTTCCTGGACCTGGCGCTCTCATGCAAAGCTGTCATCTGCTGC
Peptide sequence:
MWHTIMWKEVAVGDIVKVLNGQYLPADMVLFSSSEPQGMCYVETANLDGETNLKIRQGLSHTTDMQTRDVLMKLSGRIECEGPNRHLYDFTGNLHLDGKSSVALGPDQILLRGTQLRNTQWVFGVVVYTGHDSKLMQNSTKAPLKRSNVEKVTNVQILVLFGILLVMALVSSVGALFWNGSHGGKSWYIKKMDTNSDNFGYNLLTFIILYNNLIPISLLVTLEVVKYTQALFINWDMDMYYIENDTPAMARTSNLNEELGQVKYLFSDKTGTLTCNIMNFKKCSIAGVTYGHFPELAREQSSDDFCRMTSCTNDSCDFNDPRLLKNIEDQHPTAPCIQEFLTLLAVCHTVVPEKDGDEIIYQASSPDEAALVKGAKKLGFVFTGRTPYSVIIEAMGQEQTFGILNVLEFSSDRKRMSVIVRLPSGQLRLYCKGADNVIFERLSKDSKYMEETLCHLEYFATEGLRTLCVAYADLSENEYEEWLKVYQEASIILKDRAQRLEECYEIIEKNLLLLGATAIEDRLQAGVPETIATLLKAEIKIWVLTGDKQETAINIGYSCRLVSQNMALILLKEDSLDATRAAITQHCTDLGNLLGKENDVALIIDGHTLKYALSFEVRRSFLDLALSCKAVICCSTAKYSVLTFLPRFLYEQIRRAANAFFLFIALLQQIPDVSPTGRYTTLVPLVIILTIAGIKEIIEDFKRHKADNAVNKKKTIVLRNGMWHTIMWKEVAVGDIVKVLNGQYLPADMVLFSSSEPQGMCYVETANLDGETNLKIRQGLSHTTDMQTRDVLMKLSGRIECEGPNRHLYDFTGNLHLDGKSSVALGPDQILLRGTQLRNTQWVFGVVVYTGHDSKLMQNSTKAPLKRSNVEKVTNVQILVLFGILLVMALVSSVGALFWNGSHGGKSWYIKKMDTNSDNFGYNLLTFIILYNNLIPISLLVTLEVVKYTQALFINWDMDMYYIENDTPAMARTSNLNEELGQVKYLFSDKTGTLTCNIMNFKKCSIAGVTYGHFPELAREQSSDDFCRMTSCTNDSCDFNDPRLLKNIEDQHPTAPCIQEFLTLLAVCHTVVPEKDGDEIIYQASSPDEAALVKGAKKLGFVFTGRTPYSVIIEAMGQEQTFGILNVLEFSSDRKRMSVIVRLPSGQLRLYCKGADNVIFERLSKDSKYMEETLCHLEYFATEGLRTLCVAYADLSENEYEEWLKVYQEASIILKDRAQRLEECYEIIEKNLLLLGATAIEDRLQAGVPETIATLLKAEIKIWVLTGDKQETAINIGYSCRLVSQNMALILLKEDSLDATRAAITQHCTDLGNLLGKENDVALIIDGHTLKYALSFEVRRSFLDLALSCKAVICC
IRESfinder result
IRESfinder score
0.416249004
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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