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mmu_circAtp6v1h_363
Basic information of circular RNA
PanCircBase ID:
mmu_circAtp6v1h_363
mm39_Chr. Position ID:
chr1|5163585|5171346|+
Gene name:
Atp6v1h
Transcript:
ENSMUST00000192847.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
4,5,6,7
Exon/intron offsets:
0,2252,4666,7707
Genomic length:
7761
Exon/intron sizes in nt:
90,114,105,54
Flanking exon/introns:
chr1:5159334-5163585|chr1:5171346-5187612
Splice length:
363
Other database IDs:
circBase: hsa_circ_0008328, circAtlas: hsa-ATP6V1H_0019, CIRCpedia: HSA_CIRCpedia_61356
Human Ortholog IDs:
Mature spliced Sequence:
TGTGCTAAAACATTTATAAATCTGATGACGCACATCTCCAAAGAACAGACAGTGCAGTACATACTAACCATGGTTGACGATATGCTGCAGGAAAATCACCAGCGTGTCAGCATTTTCTTTGACTATGCGAAACGAAGCAAGAGCACTGCCTGGCCATACTTCCTGCCAATGTTGAATCGCCAGGATCCCTTTACTGTTCATATGGCAGCAAGAATTATCGCCAAGTTAGCTGCTTGGGGGAAAGAACTGATGGAAGGCAGTGACTTAAATTACTATTTCAATTGGATAAAAACTCAGCTGAGTTCACAGAAACTTCGTGGCAGCGGTGTTGCTGTTGAAACAGGAACAATCTCTTCAAGTGAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CACAGAAACTTCGTGGCAGC
60.04
CCTGCAGCATATCGTCAACC
59.06
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CACAGAAACTTCGTGGCAGC
60.04
GCAGCATATCGTCAACCATGG
59.73
147
PCR template sequence:
CTTAAATTACTATTTCAATTGGATAAAAACTCAGCTGAGTTCACAGAAACTTCGTGGCAGCGGTGTTGCTGTTGAAACAGGAACAATCTCTTCAAGTGATTGTGCTAAAACATTTATAAATCTGATGACGCACATCTCCAAAGAACAGACAGTGCAGTACATACTAACCATGGTTGACGATATGCTGCAGGAAAATCACC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-20b-5p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-106b-5p(1), mmu-miR-153-3p(1), mmu-miR-34b-5p(1), mmu-miR-224-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTCTTCAAGTGATTGTGCTAAAACAT
siRNA sets
TTTTAGCACAATCACTTGA,TTAGCACAATCACTTGAAG,ATGTTTTAGCACAATCACT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCATP6V1H_363_ORF_1
0.8425
0.163252883
0.884931335
702
ORF sequence:
ATGACGCACATCTCCAAAGAACAGACAGTGCAGTACATACTAACCATGGTTGACGATATGCTGCAGGAAAATCACCAGCGTGTCAGCATTTTCTTTGACTATGCGAAACGAAGCAAGAGCACTGCCTGGCCATACTTCCTGCCAATGTTGAATCGCCAGGATCCCTTTACTGTTCATATGGCAGCAAGAATTATCGCCAAGTTAGCTGCTTGGGGGAAAGAACTGATGGAAGGCAGTGACTTAAATTACTATTTCAATTGGATAAAAACTCAGCTGAGTTCACAGAAACTTCGTGGCAGCGGTGTTGCTGTTGAAACAGGAACAATCTCTTCAAGTGATTGTGCTAAAACATTTATAAATCTGATGACGCACATCTCCAAAGAACAGACAGTGCAGTACATACTAACCATGGTTGACGATATGCTGCAGGAAAATCACCAGCGTGTCAGCATTTTCTTTGACTATGCGAAACGAAGCAAGAGCACTGCCTGGCCATACTTCCTGCCAATGTTGAATCGCCAGGATCCCTTTACTGTTCATATGGCAGCAAGAATTATCGCCAAGTTAGCTGCTTGGGGGAAAGAACTGATGGAAGGCAGTGACTTAAATTACTATTTCAATTGGATAAAAACTCAGCTGAGTTCACAGAAACTTCGTGGCAGCGGTGTTGCTGTTGAAACAGGAACAATCTCTTCAAGTGAT
Peptide sequence:
MTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKSTAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGSGVAVETGTISSSDCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKSTAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGSGVAVETGTISSSD
IRESfinder result
IRESfinder score
0.577025456
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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