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mmu_circAtp6v1c1_318
Basic information of circular RNA
PanCircBase ID:
mmu_circAtp6v1c1_318
mm39_Chr. Position ID:
chr15|38673100|38676357|+
Gene name:
Atp6v1c1
Transcript:
ENSMUST00000022904.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
2,3,4
Exon/intron offsets:
0,1040,3171
Genomic length:
3257
Exon/intron sizes in nt:
164,68,86
Flanking exon/introns:
chr15:38662327-38673100|chr15:38676357-38677762
Splice length:
318
Other database IDs:
CIRCpedia: MMU_CIRCpedia_18949, circAtlas: mmu-Atp6v1c1_0009
CIRCpedia: HSA_CIRCpedia_179665
Human Ortholog IDs:
Mature spliced Sequence:
CTTCTCCCTTGCTTGCCAAAGAGGTAACAAACATGACTGAGTTCTGGCTCATATCTGCTCCTGGGGAGAAAACCTGTCAGCAAACATGGGAGAAACTACATGCAGCGACCACCAAGAACAATAATCTTGCCGTCTCTTCCAAGTTCAACATTCCTGACCTAAAGGTTGGCACGTTGGATGTCTTGGTTGGCTTGTCGGATGAACTGGCTAAACTGGATGCATTTGTAGAAGGTGTGGTCAAGAAAGTGGCTCAGTACATGGCTGATGTGCTGGAGGACAGCAAAGATAAAGTTCAGGAGAACTTGCTGGCCAGCGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTGGCTCAGTACATGGCTGA
59.75
GCTGACAGGTTTTCTCCCCA
59.89
154
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTGGCTCAGTACATGGCTGA
59.75
TGCTGACAGGTTTTCTCCCC
59.89
155
PCR template sequence:
GCATTTGTAGAAGGTGTGGTCAAGAAAGTGGCTCAGTACATGGCTGATGTGCTGGAGGACAGCAAAGATAAAGTTCAGGAGAACTTGCTGGCCAGCGGAGCTTCTCCCTTGCTTGCCAAAGAGGTAACAAACATGACTGAGTTCTGGCTCATATCTGCTCCTGGGGAGAAAACCTGTCAGCAAACATGGGAGAAACTACA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
CTGGCCAGCGGAGCTTCTCCCTTGCT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCATP6V1C1_318_ORF_1
1.2442
0.292963646
0.931185607
603
ORF sequence:
ATGACTGAGTTCTGGCTCATATCTGCTCCTGGGGAGAAAACCTGTCAGCAAACATGGGAGAAACTACATGCAGCGACCACCAAGAACAATAATCTTGCCGTCTCTTCCAAGTTCAACATTCCTGACCTAAAGGTTGGCACGTTGGATGTCTTGGTTGGCTTGTCGGATGAACTGGCTAAACTGGATGCATTTGTAGAAGGTGTGGTCAAGAAAGTGGCTCAGTACATGGCTGATGTGCTGGAGGACAGCAAAGATAAAGTTCAGGAGAACTTGCTGGCCAGCGGAGCTTCTCCCTTGCTTGCCAAAGAGGTAACAAACATGACTGAGTTCTGGCTCATATCTGCTCCTGGGGAGAAAACCTGTCAGCAAACATGGGAGAAACTACATGCAGCGACCACCAAGAACAATAATCTTGCCGTCTCTTCCAAGTTCAACATTCCTGACCTAAAGGTTGGCACGTTGGATGTCTTGGTTGGCTTGTCGGATGAACTGGCTAAACTGGATGCATTTGTAGAAGGTGTGGTCAAGAAAGTGGCTCAGTACATGGCTGATGTGCTGGAGGACAGCAAAGATAAAGTTCAGGAGAACTTGCTGGCCAGCGGA
Peptide sequence:
MTEFWLISAPGEKTCQQTWEKLHAATTKNNNLAVSSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLASGASPLLAKEVTNMTEFWLISAPGEKTCQQTWEKLHAATTKNNNLAVSSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLASG
IRESfinder result
IRESfinder score
0.348144668
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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