top of page
mmu_circAtp6ap2_821
Basic information of circular RNA
PanCircBase ID:
mmu_circAtp6ap2_821
mm39_Chr. Position ID:
chrX|12460999|12475193|+
Gene name:
Atp6ap2
Transcript:
ENSMUST00000033313.3
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
2,3,4,5,6,7,8
Exon/intron offsets:
0,1395,10106,10357,11520,12170,14074
Genomic length:
14194
Exon/intron sizes in nt:
13,11,32,96,13,85,41,50,000
Flanking exon/introns:
chrX:12454174-12460999|chrX:12475193-12481920
Splice length:
821
Other database IDs:
circAtlas: mmu-Atp6ap2_0002
circAtlas: hsa-ATP6AP2_0001, CIRCpedia: HSA_CIRCpedia_65784
Human Ortholog IDs:
Mature spliced Sequence:
GTGCTTTAGGGAATGAATTTAGCATATTAAGATCGCCAGGGTCTGTTGTTTTCCGAAATGGAAATTGGCCTATACCAGGAGATCGAATCCCAGACGTAGCTGCACTGTCCATGGGCTTCTCTGTAAAGGAAGACCTGTCTTGGCCAGGGCTTGCCGTGGGTAACCTATTCCACCGGCCACGGGCTACCATTATGGTGATGGTGAAGGGGGTGGATAAACTGGCACTTCCGGCAGGCAGCGTCATCTCCTACCCTTTGGAGAATGCAGTTCCTTTTAGTCTAGACAGCGTTGCAAATTCCATTCACTCCTTATTTTCGGAGGAAACACCTGTAGTTTTGCAGTTGGCTCCCAGCGAGGAGAGAGTGTATATGGTGGGGAAAGCAAACTCGGTGTTTGAAGACCTTTCAGTCACATTGCGGCAGCTCCGTAACCGCCTGTTTCAAGAAAACTCCCTTCTCAACTCTCTTCCCCTCAATTCTCTGAGTAGGAATAATGAGGTTGACCTGCTCTTTCTCTCCGAACTGCAAGTGCTACATGATATTTCCAGTTTGTTGTCTCGTCATAAGCATCTAGCCAAGGACCATTCACCCGACTTGTATTCATTGGAGCTGGCAGGTTTGGATGAACTTGGGAAGCGTTATGGGGAAGACTCTGAACAGTTCAGGGATGCTTCTAAGATCCTTGTTGATGCTCTCCAAAAGTTTGCAGATGACATGTACAGTCTCTATGGTGGGAACGCAGTGGTAGAGTTAGTGACTGTCAAATCATTCGACACATCCCTTGTGAGGAAGTCAAGGACCATCCTTGAGGCAAAACAAGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCTATGGTGGGAACGCAGTG
59.75
CAACAGACCCTGGCGATCTT
60.04
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTATGGTGGGAACGCAGTG
59.75
AAAACAACAGACCCTGGCGA
60.11
150
PCR template sequence:
TCTCTATGGTGGGAACGCAGTGGTAGAGTTAGTGACTGTCAAATCATTCGACACATCCCTTGTGAGGAAGTCAAGGACCATCCTTGAGGCAAAACAAGAGGTGCTTTAGGGAATGAATTTAGCATATTAAGATCGCCAGGGTCTGTTGTTTTCCGAAATGGAAATTGGCCTATACCAGGAGATCGAATCCCAGACGTAGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-34c-5p(1), mmu-miR-148a-3p(1), mmu-miR-185-5p(1), mmu-miR-670-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GGCAAAACAAGAGGTGCTTTAGGGAA
siRNA sets
TTCCCTAAAGCACCTCTTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCATP6AP2_821_ORF_1
1.0441
0.152923216
0.922810624
720
ORF sequence:
ATGGGCTTCTCTGTAAAGGAAGACCTGTCTTGGCCAGGGCTTGCCGTGGGTAACCTATTCCACCGGCCACGGGCTACCATTATGGTGATGGTGAAGGGGGTGGATAAACTGGCACTTCCGGCAGGCAGCGTCATCTCCTACCCTTTGGAGAATGCAGTTCCTTTTAGTCTAGACAGCGTTGCAAATTCCATTCACTCCTTATTTTCGGAGGAAACACCTGTAGTTTTGCAGTTGGCTCCCAGCGAGGAGAGAGTGTATATGGTGGGGAAAGCAAACTCGGTGTTTGAAGACCTTTCAGTCACATTGCGGCAGCTCCGTAACCGCCTGTTTCAAGAAAACTCCCTTCTCAACTCTCTTCCCCTCAATTCTCTGAGTAGGAATAATGAGGTTGACCTGCTCTTTCTCTCCGAACTGCAAGTGCTACATGATATTTCCAGTTTGTTGTCTCGTCATAAGCATCTAGCCAAGGACCATTCACCCGACTTGTATTCATTGGAGCTGGCAGGTTTGGATGAACTTGGGAAGCGTTATGGGGAAGACTCTGAACAGTTCAGGGATGCTTCTAAGATCCTTGTTGATGCTCTCCAAAAGTTTGCAGATGACATGTACAGTCTCTATGGTGGGAACGCAGTGGTAGAGTTAGTGACTGTCAAATCATTCGACACATCCCTTGTGAGGAAGTCAAGGACCATCCTTGAGGCAAAACAAGAGGTGCTTTAG
Peptide sequence:
MGFSVKEDLSWPGLAVGNLFHRPRATIMVMVKGVDKLALPAGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYMVGKANSVFEDLSVTLRQLRNRLFQENSLLNSLPLNSLSRNNEVDLLFLSELQVLHDISSLLSRHKHLAKDHSPDLYSLELAGLDELGKRYGEDSEQFRDASKILVDALQKFADDMYSLYGGNAVVELVTVKSFDTSLVRKSRTILEAKQEVL
IRESfinder result
IRESfinder score
0.648753455
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page