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mmu_circAtf6_85
Basic information of circular RNA
PanCircBase ID:
mmu_circAtf6_85
mm39_Chr. Position ID:
chr1|170574674|170574759|-
Gene name:
Atf6
Transcript:
ENSMUST00000027974.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
15
Exon/intron offsets:
0
Genomic length:
85
Exon/intron sizes in nt:
85
Flanking exon/introns:
chr1:170537656-170574674|chr1:170574759-170614914
Splice length:
85
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GATCATCTGCTATTACCAGCTACCACCCACAACAAGACCACAAGACCAAAAATGTCAATTGTATTACCAGCAATAAACATAAATG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCAAAAATGTCAATTGTATTACCAGCA
59.4
TTGTTGTGGGTGGTAGCTGG
60.18
75
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCAAAAATGTCAATTGTATTACCAGC
59.4
TTGTTGTGGGTGGTAGCTGG
60.18
76
PCR template sequence:
GACCAAAAATGTCAATTGTATTACCAGCAATAAACATAAATGGATCATCTGCTATTACCAGCTACCACCCACAACAAGACCACA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
ATAAACATAAATGGATCATCTGCTAT
siRNA sets
ATAGCAGATGATCCATTTA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCATF6_85_ORF_1
0.9164
-0.09798765
0.043138952
117
ORF sequence:
ATGTCAATTGTATTACCAGCAATAAACATAAATGGATCATCTGCTATTACCAGCTACCACCCACAACAAGACCACAAGACCAAAAATGTCAATTGTATTACCAGCAATAAACATAAA
Peptide sequence:
MSIVLPAININGSSAITSYHPQQDHKTKNVNCITSNKHK
IRESfinder result
IRESfinder score
0.456407592
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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