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mmu_circAte1_282
Basic information of circular RNA
PanCircBase ID:
mmu_circAte1_282
mm39_Chr. Position ID:
chr7|130065860|130069167|-
Gene name:
Ate1
Transcript:
ENSMUST00000035458.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
10,9
Exon/intron offsets:
0,3125
Genomic length:
3307
Exon/intron sizes in nt:
100,182
Flanking exon/introns:
chr7:130020298-130065860|chr7:130069167-130083412
Splice length:
282
Other database IDs:
CIRCpedia: MMU_CIRCpedia_7510, circAtlas: mmu-Ate1_0001
circBase: hsa_circ_0092989, circAtlas: hsa-ATE1_0002, CIRCpedia: HSA_CIRCpedia_77118
Human Ortholog IDs:
Mature spliced Sequence:
GCAGAGCACCCTGCTGATGGACCAGAATGTGGTTATGGCTCCTTTCACCAGCAGTACTGGCTCGATGGGAAGATCATTGCTGTGGGGGTGTTAGACATTCTCCCGTACTGTGTGTCTTCTGTGTATCTCTACTACGATCCTGATTATTCATTTCTGTCTTTGGGTGTCTATTCAGCATTAAGAGAAATTGCTTTTACTAGACAACTGCATGAGAAAACATCGCAACTCAGCTATTATTATATGGGTTTCTACATTCATTCCTGTCCCAAGATGAGATACAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACTGCATGAGAAAACATCGCA
58.85
CACCCCCACAGCAATGATCT
60.03
169
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGAGAAAACATCGCAACTCAGC
59.78
CACCCCCACAGCAATGATCT
60.03
163
PCR template sequence:
AGAAATTGCTTTTACTAGACAACTGCATGAGAAAACATCGCAACTCAGCTATTATTATATGGGTTTCTACATTCATTCCTGTCCCAAGATGAGATACAAGGCAGAGCACCCTGCTGATGGACCAGAATGTGGTTATGGCTCCTTTCACCAGCAGTACTGGCTCGATGGGAAGATCATTGCTGTGGGGGTGTTAGACATTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-155-5p(1), mmu-miR-101a-3p(1), mmu-miR-138-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GATGAGATACAAGGCAGAGCACCCTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCATE1_282_ORF_1
0.826
0.065594602
0.247131621
324
ORF sequence:
ATGGGTTTCTACATTCATTCCTGTCCCAAGATGAGATACAAGGCAGAGCACCCTGCTGATGGACCAGAATGTGGTTATGGCTCCTTTCACCAGCAGTACTGGCTCGATGGGAAGATCATTGCTGTGGGGGTGTTAGACATTCTCCCGTACTGTGTGTCTTCTGTGTATCTCTACTACGATCCTGATTATTCATTTCTGTCTTTGGGTGTCTATTCAGCATTAAGAGAAATTGCTTTTACTAGACAACTGCATGAGAAAACATCGCAACTCAGCTATTATTATATGGGTTTCTACATTCATTCCTGTCCCAAGATGAGATACAAG
Peptide sequence:
MGFYIHSCPKMRYKAEHPADGPECGYGSFHQQYWLDGKIIAVGVLDILPYCVSSVYLYYDPDYSFLSLGVYSALREIAFTRQLHEKTSQLSYYYMGFYIHSCPKMRYK
IRESfinder result
IRESfinder score
0.830927225
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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