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mmu_circAsh2l_580_2
Basic information of circular RNA
PanCircBase ID:
mmu_circAsh2l_580_2
mm39_Chr. Position ID:
chr8|26317201|26323874|-
Gene name:
Ash2l
Transcript:
ENSMUST00000068892.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
10,9,8,7,6
Exon/intron offsets:
0,1592,4099,5466,6577
Genomic length:
6673
Exon/intron sizes in nt:
218,94,76,96,96
Flanking exon/introns:
chr8:26313334-26317201|chr8:26323874-26324987
Splice length:
580
Other database IDs:
CIRCpedia: MMU_CIRCpedia_38008, circAtlas: mmu-Ash2l_0001
circBase: hsa_circ_0006302, circAtlas: hsa-ASH2L_0001, CIRCpedia: HSA_CIRCpedia_60945
Human Ortholog IDs:
Mature spliced Sequence:
GATATTATACCATTTATTGATAAATACTGGGAATGTATGACAACCAGACAGAGACCTGGAAAAATGACTTGGCCCAATAACATTGTCAAAACAATGAGTAAGGAAAGAGATGTGTTCTTGGTAAAGGAACACCCTGACCCAGGAAGCAAAGACCCAGAAGAAGATTACCCCAAGTTTGGACTTTTGGATCAGGATCTTAGTAATATTGGTCCTGCTTATGACAACCAGAAACAAAGCAGTGCTGTGTCTGCTAGTGGGAACCTAAATGGGGGGATCGCAGCCGGAAGCAGTGGGAAAGGAAGAGGAGCCAAGCGTAAGCAGCAAGATGGAGGGACAACAGGGACCACCAAGAAGGCCAGAAGTGATCCTTTATTTTCTGCTCAGCGTCTCCCTCCTCATGGCTATCCTTTGGAACATCCATTTAACAAAGATGGCTATCGGTATATTCTTGCTGAGCCCGATCCTCATGCCCCCGACCCGGAGAAGCTTGAACTTGACTGCTGGGCGGGAAAGCCTATTCCTGGAGACCTTTACAGAGCCTGCTTATATGAACGAGTCTTGTTAGCCCTACATGATCGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTTGAACTTGACTGCTGGGC
59.4
CCAGGTCTCTGTCTGGTTGTC
60
153
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCTTGAACTTGACTGCTGGG
59.4
CCAGGTCTCTGTCTGGTTGTC
60
154
PCR template sequence:
GAGAAGCTTGAACTTGACTGCTGGGCGGGAAAGCCTATTCCTGGAGACCTTTACAGAGCCTGCTTATATGAACGAGTCTTGTTAGCCCTACATGATCGAGGATATTATACCATTTATTGATAAATACTGGGAATGTATGACAACCAGACAGAGACCTGGAAAAATGACTTGGCCCAATAACATTGTCAAAACAATGAGTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-3105-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTACATGATCGAGGATATTATACCAT
siRNA sets
ATAATATCCTCGATCATGT,TAATATCCTCGATCATGTA,TATAATATCCTCGATCATG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCASH2L_580_2_ORF_1
0.9513
0.138142254
0.786986068
588
ORF sequence:
ATGATCGAGGATATTATACCATTTATTGATAAATACTGGGAATGTATGACAACCAGACAGAGACCTGGAAAAATGACTTGGCCCAATAACATTGTCAAAACAATGAGTAAGGAAAGAGATGTGTTCTTGGTAAAGGAACACCCTGACCCAGGAAGCAAAGACCCAGAAGAAGATTACCCCAAGTTTGGACTTTTGGATCAGGATCTTAGTAATATTGGTCCTGCTTATGACAACCAGAAACAAAGCAGTGCTGTGTCTGCTAGTGGGAACCTAAATGGGGGGATCGCAGCCGGAAGCAGTGGGAAAGGAAGAGGAGCCAAGCGTAAGCAGCAAGATGGAGGGACAACAGGGACCACCAAGAAGGCCAGAAGTGATCCTTTATTTTCTGCTCAGCGTCTCCCTCCTCATGGCTATCCTTTGGAACATCCATTTAACAAAGATGGCTATCGGTATATTCTTGCTGAGCCCGATCCTCATGCCCCCGACCCGGAGAAGCTTGAACTTGACTGCTGGGCGGGAAAGCCTATTCCTGGAGACCTTTACAGAGCCTGCTTATATGAACGAGTCTTGTTAGCCCTACATGATCGA
Peptide sequence:
MIEDIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQSSAVSASGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDR
IRESfinder result
IRESfinder score
0.458209158
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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